From ffef612c41a0d0844f79ac824a0e5265f280f81a Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Mon, 28 Oct 2019 13:50:33 +0900 Subject: [PATCH] Published in PLoS Comput Biol. --- biblio/{10.1101_261149.mdwn => 31433799.mdwn} | 6 +++--- tags/assembly.mdwn | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) rename biblio/{10.1101_261149.mdwn => 31433799.mdwn} (68%) diff --git a/biblio/10.1101_261149.mdwn b/biblio/31433799.mdwn similarity index 68% rename from biblio/10.1101_261149.mdwn rename to biblio/31433799.mdwn index cf7b5e55..2955057e 100644 --- a/biblio/10.1101_261149.mdwn +++ b/biblio/31433799.mdwn @@ -1,10 +1,10 @@ [[!meta title="Integrating Hi-C links with assembly graphs for chromosome-scale assembly"]] [[!tag genome assembly method]] -Jay Ghurye, Arang Rhie, Brian P. Walenz, Anthony Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren +PLoS Comput Biol. 2019 Aug 21;15(8):e1007273. doi:10.1371/journal.pcbi.1007273 -bioRxiv, first February 07, 2018. +Jay Ghurye, Arang Rhie, Brian P. Walenz, Anthony Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren Integrating Hi-C links with assembly graphs for chromosome-scale assembly -[[!doi 10.1101/261149 desc="Uses unitigs and the assembly graph as input."]] +[[!pmid 31433799 desc="Uses unitigs and the assembly graph as input."]] diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index b9f86208..9d5a0012 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -42,7 +42,7 @@ SALSA (Simple AssembLy ScAffolder, [[Ghurye and coll., 2017|biblio/28701198]]) takes Hi-C data and contigs as input and scaffolds them under the hypothesis that most contact points are due to local (same-chromosome) proximity. Version 2 of SALSA uses unitigs and the assembly graph as input ([[Ghurye and coll., -2018|biblio/10.1101_261149]]). +2019|biblio/31433799]]). BUSCO ([[Simão and coll., 2015|biblio/26059717]], [[Waterhouse and coll., 2017|biblio/29220515]]) assesses the presence of evolutionary conserved single-copy -- 2.47.3