From f1b074f14799fac2390ab19d4668fc319a5731ea Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Wed, 31 Jan 2018 12:37:00 +0900 Subject: [PATCH] Old --- biblio/To_Do | 36 ------------------------------------ 1 file changed, 36 deletions(-) diff --git a/biblio/To_Do b/biblio/To_Do index 587bb3ed..84b9deb5 100644 --- a/biblio/To_Do +++ b/biblio/To_Do @@ -4,18 +4,6 @@ Nature 430, 85 - 88 (01 July 2004); doi:10.1038/nature02698 Evolutionary changes in cis and trans gene regulation PATRICIA J. WITTKOPP, BELINDA K. HAERUM & ANDREW G. CLARK - -Nature 411, 41 - 42 (03 May 2001); doi:10.1038/35075138 -Lethality and centrality in protein networks -The most highly connected proteins in the cell are the most important for its survival. - - -Nature \ 430, 88 - 93 (01 July 2004); doi:10.1038/nature02555 -Nature AOP, published online 9 June 2004 -Evidence for dynamically organized modularity in the yeast proteinprotein interaction network -JING-DONG J. HAN1, NICOLAS BERTIN1, TONG HAO1, DEBRA S. GOLDBERG2, GABRIEL F. BERRIZ2, LAN V. ZHANG2, DENIS DUPUY1, ALBERTHA J. M. WALHOUT1,*, MICHAEL E. CUSICK1, FREDERICK P. ROTH2 & MARC VIDAL1 - - 1557406 Adds a second round of amplification @@ -103,9 +91,6 @@ Apical localisation increases the robustness of development (more segmenatal def 14732405 [promoters] Pax6 has at least two transcription start sites. -15196954 [enhancers] [review] -Gene networks. - 15379890 [alternative promoters] RLM-RACE to identify variants. CHIP to confirm TBP on TATA-less promoters. Luciferase assays to confirm new promoters. @@ -386,9 +371,6 @@ Usage of "Bayes Error Rate" instead of a cutoff on p-values. R packaged availabl 16103215 [misc] Supports the idea that the only function of some RNA is to have been transcribed. -16094371 [networks] -Functional validation. - 16077029 [misc] Suppressive PCR allows the use of one gene-specific primer, and one random primer. Asymetric cloning is the second safeguard against background. @@ -404,9 +386,6 @@ Sequence surrounding UCRs might regulate negatively their activity. 16141073 [genome] S/AS pairs usually show positive correlation of their expression. -16168087 [networks] -Different collaboration network in different research consortiums. - 16120967 [enzymes] Apparently, only one of the two head-to-head sites is cut... @@ -416,9 +395,6 @@ When a group of TFs have more than one Transfac entry, only the most over-repres 11842121 [mining] Normalisation between print tips. -16141248 [networks] -Primary paper for the GeneNT R library. Clustering using direct and shortest-path distances. - 16227618 [mirna] The intergenic transcripts do not seem to be polymerised by pol IV @@ -713,9 +689,6 @@ ChIp, then extraction of tags. 15582152 [misc] No correlation between in situ expression pattern and gene ontology in the brain. -17470793 [networks] -[not read] Reshaping of networks to a tree-like structure using renormalisation. - 17405768 [microfluidics] Cycling 100 times (94°C for 30 s, 55°C for 30 s, and 72°C for 60 s) in 0.1% DDM, x1 Pfu Buffer before use improves product yield. @@ -740,9 +713,6 @@ Transcription of 5' fragments was detected on promoters of genes which produce l 11328886 [pcr] Method of normalisation taking PCR efficiency into account. -17609372 [networks] -Disease network. - 17550599 [enhancers] 35 % of conserved Drosophila enhancers are transcribed (as detected by tiling arrays). @@ -815,9 +785,6 @@ Identifies specific genes of neurons, astrocytes and oligodendrocytes. 18195365 [misc] After 10 weeks, elevated DNA strand break levels are detected in the sperm DNA of mice raised near a highway or a steel factory, but not in controls breezing the same but filtered air. -16902134 [networks] -Behavioral graph coloring - 16449203 [enzymes] 2'OMe RNAs can not be polyadenylated in vitro. @@ -851,9 +818,6 @@ Two genes of opposite expression profiles define a "top scoring pair", and are u 18369765 [microfluidics] Another implementation of the revese-transcription on beads. -18362361 [networks] -[not read] Algorithm to transform a time serie into a graph. - 18417536 [enhancers] First report of a conserved enhancer in a coding sequence ? -- 2.47.3