From f18f0452f8defa7a44b4e7c2218425b5ccf0dec7 Mon Sep 17 00:00:00 2001 From: Charles Date: Mon, 8 Apr 2019 12:56:32 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/30890163.mdwn | 10 ++++++++++ tags/LAST.mdwn | 3 +++ 2 files changed, 13 insertions(+) create mode 100644 biblio/30890163.mdwn diff --git a/biblio/30890163.mdwn b/biblio/30890163.mdwn new file mode 100644 index 00000000..c24f0604 --- /dev/null +++ b/biblio/30890163.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads."]] +[[!tag LAST alignment repeat]] + +Mitsuhashi S, Frith MC, Mizuguchi T, Miyatake S, Toyota T, Adachi H, Oma Y, Kino Y, Mitsuhashi H, Matsumoto N. + +Genome Biol. 2019 Mar 19;20(1):58. doi:10.1186/s13059-019-1667-6 + +Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads. + +[[!pmid 30890163 desc="Primary paper for the `tandem-genotypes` tool. Be sure to compar both strands to prevent confusion between alleles and sequencer-specific biases."]] diff --git a/tags/LAST.mdwn b/tags/LAST.mdwn index bbe708a0..463ab235 100644 --- a/tags/LAST.mdwn +++ b/tags/LAST.mdwn @@ -13,4 +13,7 @@ _bibliography in progress..._ and display of rearrangements supported by multiple long reads and by the ancestrality of the reference sequence. + - `tandem-genotypes` ([[Mitsuhashi and coll., 2019|biblio/30890163]]): detection + of expansion of tandem repeats, after alignment with `last-split`. + [[!inline pages="tagged(LAST)" actions="no" limit=0]] -- 2.47.3