From ead5dc86b79a7314dd566a59e79bba4a8384df01 Mon Sep 17 00:00:00 2001 From: Charles Date: Tue, 29 Sep 2020 15:11:06 +0900 Subject: [PATCH] Cleanup --- biblio/20133776.mdwn | 2 +- biblio/22820316.mdwn | 2 +- biblio/23354052.mdwn | 2 +- biblio/25417166.mdwn | 2 +- biblio/28280153.mdwn | 2 +- biblio/30069045.mdwn | 2 +- biblio/31719208.mdwn | 2 +- biblio/31932426.mdwn | 2 +- biblio/32103016.mdwn | 2 +- tags/synteny.mdwn | 3 +++ tags/synthethic.mdwn | 7 ------- tags/synthetic.mdwn | 9 ++++++--- 12 files changed, 18 insertions(+), 19 deletions(-) delete mode 100644 tags/synthethic.mdwn diff --git a/biblio/20133776.mdwn b/biblio/20133776.mdwn index 0d6d6011..f0d7ea72 100644 --- a/biblio/20133776.mdwn +++ b/biblio/20133776.mdwn @@ -1,3 +1,3 @@ [[!meta title="Synthetic design of strong promoters."]] -[[!tag promoter synthethic oligonucleotides method]] +[[!tag promoter synthetic oligonucleotides method]] [[!pmid 20133776 desc="The sequence library was created by printing oligonucleotides with restriction sites on a microarray, and releasing them by cleavage."]] diff --git a/biblio/22820316.mdwn b/biblio/22820316.mdwn index 091e390d..95dc1994 100644 --- a/biblio/22820316.mdwn +++ b/biblio/22820316.mdwn @@ -1,5 +1,5 @@ [[!meta title="A tissue-engineered jellyfish with biomimetic propulsion."]] -[[!tag synthethic]] +[[!tag synthetic]] Nawroth JC, Lee H, Feinberg AW, Ripplinger CM, McCain ML, Grosberg A, Dabiri JO, Parker KK. diff --git a/biblio/23354052.mdwn b/biblio/23354052.mdwn index d0ef0589..b5994a93 100644 --- a/biblio/23354052.mdwn +++ b/biblio/23354052.mdwn @@ -1,5 +1,5 @@ [[!meta title="Towards practical, high-capacity, low-maintenance information storage in synthesized DNA."]] -[[!tag synthethic DNA sequencing]] +[[!tag synthetic DNA sequencing]] Goldman N, Bertone P, Chen S, Dessimoz C, Leproust EM, Sipos B, Birney E. diff --git a/biblio/25417166.mdwn b/biblio/25417166.mdwn index cfb8e0f9..055c81ff 100644 --- a/biblio/25417166.mdwn +++ b/biblio/25417166.mdwn @@ -1,5 +1,5 @@ [[!meta title="Toehold switches: de-novo-designed regulators of gene expression."]] -[[!tag not_read synthethic]] +[[!tag not_read synthetic]] Cell. 2014 Nov 6;159(4):925-39. doi:10.1016/j.cell.2014.10.002 diff --git a/biblio/28280153.mdwn b/biblio/28280153.mdwn index ab50fef4..ac6a30d3 100644 --- a/biblio/28280153.mdwn +++ b/biblio/28280153.mdwn @@ -1,5 +1,5 @@ [[!meta title="Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome."]] -[[!tag yeast synthethic chromosome]] +[[!tag yeast synthetic chromosome]] Science. 2017 Mar 10;355(6329). pii: eaaf4791. doi:10.1126/science.aaf4791 diff --git a/biblio/30069045.mdwn b/biblio/30069045.mdwn index 0e604bc9..3e46cb5f 100644 --- a/biblio/30069045.mdwn +++ b/biblio/30069045.mdwn @@ -1,5 +1,5 @@ [[!meta title="Creating a functional single-chromosome yeast."]] -[[!tag yeast genome synthethic]] +[[!tag yeast genome synthetic]] Nature. 2018 Aug 1. doi:10.1038/s41586-018-0382-x diff --git a/biblio/31719208.mdwn b/biblio/31719208.mdwn index 00673cc8..d2607ee7 100644 --- a/biblio/31719208.mdwn +++ b/biblio/31719208.mdwn @@ -1,5 +1,5 @@ [[!meta title="Definitive demonstration by synthesis of genome annotation completeness."]] -[[!tag synthethic]] +[[!tag synthetic]] Jaschke PR, Dotson GA, Hung KS, Liu D, Endy D. diff --git a/biblio/31932426.mdwn b/biblio/31932426.mdwn index 21a308d9..de22bd84 100644 --- a/biblio/31932426.mdwn +++ b/biblio/31932426.mdwn @@ -1,5 +1,5 @@ [[!meta title="A scalable pipeline for designing reconfigurable organisms."]] -[[!tag synthethic]] +[[!tag synthetic]] Kriegman S, Blackiston D, Levin M, Bongard J diff --git a/biblio/32103016.mdwn b/biblio/32103016.mdwn index 4aa7f3da..24adcc82 100644 --- a/biblio/32103016.mdwn +++ b/biblio/32103016.mdwn @@ -12,6 +12,6 @@ transcription with N(p)nN cap analogs at mM concentrations. LC-MS analysis of sRNAs digested with Nuclease P1 detects N(p)nN caps. Existence of the internal polyphosphate chain demonstrated by the fact that the N(p)nN caps are not fragmented by ionization, like GppppG and unlike pppGpG. m7Gp4Gm and m6Ap3A -were further identified using synthethic standards. The RppH and ApaH enzymes +were further identified using synthetic standards. The RppH and ApaH enzymes cleaved caps, leaving 5′-p or 5′-ppp ends respectively. Cap methylation protects from RppH cleavage but not from ApaH."]] diff --git a/tags/synteny.mdwn b/tags/synteny.mdwn index 9a374f6b..eb31c383 100644 --- a/tags/synteny.mdwn +++ b/tags/synteny.mdwn @@ -19,6 +19,9 @@ The ancestral amniote has 49 chromosomes according to [[Sacerdot and coll., 2018 compartment” “Overlaps of TAD boundaries and SB breakpoints in all comparisons are highly significant” +[[Ranz and coll., 2001|biblio/11157786]] estimate an evolution rate of 0.9–1.4 +chromosomal inversions fixed per million years in _Drosophila_. + In insects, the Osiris gene family shows conservation of synteny over ~400 million years ([[Sah and coll., 2012|biblio/22384409]]). diff --git a/tags/synthethic.mdwn b/tags/synthethic.mdwn deleted file mode 100644 index d8a82e40..00000000 --- a/tags/synthethic.mdwn +++ /dev/null @@ -1,7 +0,0 @@ -[[!meta title="pages tagged synthethic"]] - -_in progress_ - -Sc3.0 roadmap: [[Dai and coll., 2020|32791980]]. - -[[!inline pages="tagged(synthethic)" limit=0]] diff --git a/tags/synthetic.mdwn b/tags/synthetic.mdwn index 0f4fd49c..d8a82e40 100644 --- a/tags/synthetic.mdwn +++ b/tags/synthetic.mdwn @@ -1,4 +1,7 @@ -[[!meta title="pages tagged synthetic"]] +[[!meta title="pages tagged synthethic"]] -[[!inline pages="tagged(synthetic)" actions="no" archive="yes" -feedshow=10]] +_in progress_ + +Sc3.0 roadmap: [[Dai and coll., 2020|32791980]]. + +[[!inline pages="tagged(synthethic)" limit=0]] -- 2.47.3