From cf38e2cc794179e34df630b3aa3162d88d0ae34a Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Tue, 5 Jul 2011 19:25:48 +0900 Subject: [PATCH] EcoP15I. --- biblio/14676315.mdwn | 3 +++ biblio/16026759.mdwn | 2 +- biblio/19250940.mdwn | 4 ++-- biblio/20435912.mdwn | 3 +++ biblio/7796821.mdwn | 3 +++ biblio/To_Do | 6 ------ 6 files changed, 12 insertions(+), 9 deletions(-) create mode 100644 biblio/14676315.mdwn create mode 100644 biblio/20435912.mdwn create mode 100644 biblio/7796821.mdwn diff --git a/biblio/14676315.mdwn b/biblio/14676315.mdwn new file mode 100644 index 00000000..03705a2a --- /dev/null +++ b/biblio/14676315.mdwn @@ -0,0 +1,3 @@ +[[!meta title="Gene expression analysis of plant host-pathogen interactions by SuperSAGE."]] +[[!tag sequence_tags SAGE method EcoP15I enzyme] +[[!pmid 14676315 desc="Uses the class III enzyme EcoP15I to get longer tags."]] diff --git a/biblio/16026759.mdwn b/biblio/16026759.mdwn index 26c9c1f7..e40efad3 100644 --- a/biblio/16026759.mdwn +++ b/biblio/16026759.mdwn @@ -1,3 +1,3 @@ [[!meta title="Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP15I--usefulness in SAGE."]] -[[!tag enzyme products method sequence_tags]] +[[!tag EcoP15I enzyme products method sequence_tags]] [[!pmid 16026759 desc="Sinefungin promotes cleavage of the DNA molecules even if they contain only one EcoP15I site."]] diff --git a/biblio/19250940.mdwn b/biblio/19250940.mdwn index 7ef8a9a2..7fa9b352 100644 --- a/biblio/19250940.mdwn +++ b/biblio/19250940.mdwn @@ -1,3 +1,3 @@ [[!meta title="Functional Characterization and Modulation of the DNA Cleavage Efficiency of Type III Restriction Endonuclease EcoP15I in Its Interaction with Two Sites in the DNA Target."]] -[[!tag enzyme products sequence_tags]] -[[!pmid 19250940 desc="“Adenine stretches on the 5' or 3' side of CAGCAG led to preferred cleavage of this site.”"]] +[[!tag EcoP15I enzyme products sequence_tags]] +[[!pmid 19250940 desc="“Adenine stretches on the 5′ or 3′ side of CAGCAG led to preferred cleavage of this site.”"]] diff --git a/biblio/20435912.mdwn b/biblio/20435912.mdwn new file mode 100644 index 00000000..d45705f4 --- /dev/null +++ b/biblio/20435912.mdwn @@ -0,0 +1,3 @@ +[[!meta title="Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat"]] +[[!tag EcoP15I enzyme]] +[[!pmid 20435912 desc="Measures kinetics using single molecule imaging."]] diff --git a/biblio/7796821.mdwn b/biblio/7796821.mdwn new file mode 100644 index 00000000..0647d7b9 --- /dev/null +++ b/biblio/7796821.mdwn @@ -0,0 +1,3 @@ +[[!meta title="Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis."]] +[[!tag EcoP15I enzyme]] +[[!pmid 7796821 desc="Protein bound to the DNA between the EcoP15I sites interfers negatively with cleavage."]] diff --git a/biblio/To_Do b/biblio/To_Do index 4b9446e4..c93d78e8 100644 --- a/biblio/To_Do +++ b/biblio/To_Do @@ -669,12 +669,6 @@ The ultraconserved elements in the Irx clusters are transcription enhancers. 15037782 [enzymes] The adenylation of RNA by T4 RNL1 is enhanced when they are annealed to a DNA oligos, leaving 3-4 protruding 5'ribonucleotides. -7796821 [enzymes] -Protein bound to the DNA between the EcoP15I interfer negatively with cleavage. - -14676315 [tags] -Uses the class III enzyme EcoP15I to get longer tags. - 15899965 [enhancers] Out of 126 ultraconserved elements in a melanogaster / A. Gambiae comparison, only 1 is intergenic, the other being mostly ncRNA and exons. -- 2.47.3