From c663b2445b7531858fcbf887e7a3dfde48844677 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Tue, 3 Feb 2015 17:23:45 +0900 Subject: [PATCH] Journal club. --- biblio/25032992.mdwn | 10 ++++++++++ biblio/25599176.mdwn | 10 ++++++++++ 2 files changed, 20 insertions(+) create mode 100644 biblio/25032992.mdwn create mode 100644 biblio/25599176.mdwn diff --git a/biblio/25032992.mdwn b/biblio/25032992.mdwn new file mode 100644 index 00000000..9f3e4651 --- /dev/null +++ b/biblio/25032992.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Modeling bi-modality improves characterization of cell cycle on gene expression in single cells."]] +[[!tag single_cell cell_cycle journal_club]] + +PLoS Comput Biol. 2014 Jul 17;10(7):e1003696. doi:10.1371/journal.pcbi.1003696 + +McDavid A, Dennis L, Danaher P, Finak G, Krouse M, Wang A, Webster P, Beechem J, Gottardo R + +Modeling bi-modality improves characterization of cell cycle on gene expression in single cells. + +[[!pmid 25032992 desc="333 genes studied in 930 cells with the Hurdle model. Nanostring technology. “the cell cycle explains only 5%-17% of expression variability”"]] diff --git a/biblio/25599176.mdwn b/biblio/25599176.mdwn new file mode 100644 index 00000000..2e9e1df2 --- /dev/null +++ b/biblio/25599176.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells."]] +[[!tag single_cell cell_cycle C1 journal_club]] + +Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. + +Nat Biotechnol. 2015 Jan 19. doi:10.1038/nbt.3102 + +Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. + +[[!pmid 25599176 desc="scLVM (single-cell latent variable model) normalises data for cell cycle or other sources of variation."]] -- 2.47.3