From c5ffca9a0df4e67db9ce0993ee49c153dc17bc46 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Mon, 16 Jun 2025 14:13:43 +0900 Subject: [PATCH] Beniimo croissant --- biblio/40425826.mdwn | 10 ++++++++++ tags/synteny.mdwn | 4 ++++ 2 files changed, 14 insertions(+) create mode 100644 biblio/40425826.mdwn diff --git a/biblio/40425826.mdwn b/biblio/40425826.mdwn new file mode 100644 index 00000000..c6eb00e0 --- /dev/null +++ b/biblio/40425826.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Conservation of regulatory elements with highly diverged sequences across large evolutionary distances."]] +[[!tag synteny]] + +Nat Genet. 2025 Jun;57(6):1524-1534. doi: 10.1038/s41588-025-02202-5 + +Phan MHQ, Zehnder T, Puntieri F, Magg A, Majchrzycka B, Antonović M, Wieler H, Lo BW, Baranasic D, Lenhard B, Müller F, Vingron M, Ibrahim DM. + +Conservation of regulatory elements with highly diverged sequences across large evolutionary distances. + +[[!pmid 40425826 desc="“Interspecies point projection (IPP) [is] a synteny-based algorithm designed to map corresponding genomic locations in highly diverged genomes”. “We term [...] sequence-diverged orthologs ‘indirectly conserved’ (IC)”"]] diff --git a/tags/synteny.mdwn b/tags/synteny.mdwn index ff936b28..b0d18deb 100644 --- a/tags/synteny.mdwn +++ b/tags/synteny.mdwn @@ -127,4 +127,8 @@ Chiton species of very similar morphology can have different karyotypes - “Chains” and “nets” of pairwise alignements between two genomes are described in [[Kent and coll, 2003|biblio/14500911]]. + - [[Phan and coll., 2025|biblio/40425826]] use syntenic bridge alignments to + associate unalignable pairs of sequences in pairs of evolutionary distant + species, using an approach they call interspecies point projection (IPP). + [[!inline pages="tagged(synteny)" limit=0]] -- 2.47.3