From bfe2d49d63bd63ddcc79e7813eece3d52a1ba0aa Mon Sep 17 00:00:00 2001 From: Charles Date: Thu, 4 Feb 2021 07:06:14 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/10.1101_2021.01.25.428050.mdwn | 10 ++++++++++ tags/LAST.mdwn | 3 +++ 2 files changed, 13 insertions(+) create mode 100644 biblio/10.1101_2021.01.25.428050.mdwn diff --git a/biblio/10.1101_2021.01.25.428050.mdwn b/biblio/10.1101_2021.01.25.428050.mdwn new file mode 100644 index 00000000..b9592bb0 --- /dev/null +++ b/biblio/10.1101_2021.01.25.428050.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Improved DNA-versus-Protein Homology Search for Protein Fossils"]] +[[!tag bioRxiv LAST repeat]] + +Yin Yao, Martin C. Frith + +bioRxiv 2021.01.25.428050; doi: https://doi.org/10.1101/2021.01.25.428050 + +Improved DNA-versus-Protein Homology Search for Protein Fossils + +[[!doi 10.1101/2021.01.25.428050 desc="Uses a 64 x 21 substitution matrix and automatically learns the genetic code. Detected fossils of the polinton and DIRS/Ngaro repeat elements in the human genome. 10 times faster than blastx."]] diff --git a/tags/LAST.mdwn b/tags/LAST.mdwn index f02c8785..c6fbd8f4 100644 --- a/tags/LAST.mdwn +++ b/tags/LAST.mdwn @@ -21,4 +21,7 @@ _bibliography in progress..._ - `tandem-genotypes` ([[Mitsuhashi and coll., 2019|biblio/30890163]]): detection of expansion of tandem repeats, after alignment with `last-split`. + - LAST can align DNA sequences to protein databases using a 64 x 21 substitution + matrix [[Yao and Frith, 2020|biblio/10.1101_2021.01.25.428050]]. + [[!inline pages="tagged(LAST)" actions="no" limit=0]] -- 2.47.3