From b2f78e91f65d74e906ee004c7395318878596bfd Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Thu, 6 Jan 2022 13:09:58 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/34934012.mdwn | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 biblio/34934012.mdwn diff --git a/biblio/34934012.mdwn b/biblio/34934012.mdwn new file mode 100644 index 00000000..cdbb799c --- /dev/null +++ b/biblio/34934012.mdwn @@ -0,0 +1,10 @@ +[[!meta title="AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication."]] +[[!tag genome alignment software]] + +Song B, Marco-Sola S, Moreto M, Johnson L, Buckler ES, Stitzer MC. + +Proc Natl Acad Sci U S A. 2022 Jan 4;119(1):e2113075119. doi:10.1073/pnas.2113075119 + +AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication. + +[[!pmid desc=""1) Maps a transcriptome to its reference genome. 2) Extracts "anchor" coding sequences. 3) Searches for homologous sequences in the query genome. 4) Realigns the sequences between homologous anchors. The so-called comparison to LAST is actually a comparison with LAST + AxtChain, that is: it does not use last-split.]] -- 2.47.3