From a5d3a8f64ee72fe7b75048a9f40a8c81b6830c10 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Fri, 15 Apr 2022 15:31:01 +0900 Subject: [PATCH] Corrections --- tags/LAST.mdwn | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tags/LAST.mdwn b/tags/LAST.mdwn index 8157f372..8a7d8a81 100644 --- a/tags/LAST.mdwn +++ b/tags/LAST.mdwn @@ -5,7 +5,7 @@ _bibliography in progress..._ - Whole-genome alignments with reversed sequences as negative controls showed that e-value filtering is not enough to remove spurious alignments of tandem repeat which therefore need to be masked ([[Frith MC, Hamada M and Horton P., - 2011|bilbio/20144198]]). + 2011|biblio/20144198]]). - `lastdb` can use various seeding schemes to build its index. [[Frith and Noé (2014)|biblio/24493737]] discuss some of them. The `RY` seeds are made @@ -33,7 +33,7 @@ _bibliography in progress..._ of expansion of tandem repeats, after alignment with `last-split`. - LAST can align DNA sequences to protein databases using a 64 x 21 substitution - matrix [[Yao and Frith, 2020|biblio/10.1101_2021.01.25.428050]]. + matrix [[Yao and Frith, 2020|biblio/10.1007_978-3-030-74432-8_11]]. - JRA (Joint Read Alignment) uses LAST [[Shrestha and coll., 2018|biblio/29182778]]. -- 2.47.3