From a208cdcb7cc6297b4e50244b4e630b4d4e113231 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Wed, 23 Oct 2019 11:57:18 +0900 Subject: [PATCH] Dans l'avion. --- biblio/31621849.mdwn | 10 ++++++++++ tags/Ciona.mdwn | 8 +++++--- tags/mitochondrion.mdwn | 3 +++ 3 files changed, 18 insertions(+), 3 deletions(-) create mode 100644 biblio/31621849.mdwn diff --git a/biblio/31621849.mdwn b/biblio/31621849.mdwn new file mode 100644 index 00000000..d97868b2 --- /dev/null +++ b/biblio/31621849.mdwn @@ -0,0 +1,10 @@ +[[!meta title="A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona."]] +[[!tag Ciona genome]] + +Genome Biology and Evolution, 2019 Oct 17, evz228, doi:10.1093/gbe/evz228 + +Yutaka Satou, Ryohei Nakmura, Yu Deli, Reiko Yoshida, Mayuko Hamada, Manabu Fujie, Kanako Hisata, Hiroyuki Takeda, Noriyuki Satoh + +A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona. + +[[!pmid 31621849 desc="More complete assembly (HT, standing for Hoya T-strain) where most protein-coding genes are included in chromosomal contigs. Finds and discusses inversions within Ciona robusta genomes and between Ciona robusta and savigniy."]] diff --git a/tags/Ciona.mdwn b/tags/Ciona.mdwn index eee06857..5b05baee 100644 --- a/tags/Ciona.mdwn +++ b/tags/Ciona.mdwn @@ -39,10 +39,12 @@ Speciation is estimated to have happened during the Pliocene (≈ 3.8 Ma); a recent introgression then happened 15,000 years ago ([[Roux and coll., 2013|biblio/23564941]]). +Latest _Ciona robusta_ genome: version HT ([[Satou and coll., +2019|biblio/31621849]]) is a reassembly of the KS genome using Hi-C and PacBio +additional data, in which over 95 % of the dequences is included in +chromosomes. + Mitochondrial gene order differs even within the _Ciona_ genus ([[Gissi, Iannelli and Pesole 2004|biblio/15114417]]). -_Ciona savignyi_ uses the same mitochodrial genetic code as of other ascidians -studied before ([[Yokobori, Watanabe and Oshima, 2003|biblio/14738316]]). - [[!inline pages="tagged(Ciona)" actions="no" limit=0]] diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn index a35fc849..20e369db 100644 --- a/tags/mitochondrion.mdwn +++ b/tags/mitochondrion.mdwn @@ -36,6 +36,9 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]). - In the hemichordate _Balanoglossus carnosus_ ([[Castresana and coll., 1998|biblio/9799263]]): ATA → Ile, AGA → Ser, AGG → ø and AAA → ø. + - _Ciona savignyi_ uses the same mitochodrial genetic code as of other ascidians + studied before ([[Yokobori, Watanabe and Oshima, 2003|biblio/14738316]]). + ``` AGA AGG ATA AAA TGA -- 2.47.3