From a19ff7040e692d5848c77b1da55b1cfdecaffbdd Mon Sep 17 00:00:00 2001 From: Charles Date: Thu, 10 Jan 2019 13:37:40 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/28407147.mdwn | 10 ++++++++++ tags/assembly.mdwn | 10 ++++++++-- 2 files changed, 18 insertions(+), 2 deletions(-) create mode 100644 biblio/28407147.mdwn diff --git a/biblio/28407147.mdwn b/biblio/28407147.mdwn new file mode 100644 index 00000000..0b2c53e5 --- /dev/null +++ b/biblio/28407147.mdwn @@ -0,0 +1,10 @@ +[[!meta title="HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly."]] +[[!tag assembly]] + +Huang S, Kang M, Xu A. + +Bioinformatics. 2017 Aug 15;33(16):2577-2579. doi:10.1093/bioinformatics/btx220 + +HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly. + +[[!pmid 28407147 desc="Produces a reference and an alternate assembly. Scaffolding is improved by cross-comparison of the assemblies."]] diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index 5715125b..4a703d7c 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -1,4 +1,10 @@ [[!meta title="pages tagged assembly"]] -[[!inline pages="tagged(assembly)" actions="no" archive="yes" -feedshow=10]] +# Genome assembly software + +_In progress..._ + +The HaploMerger2 pipeline ([[Huang and coll., 2017|biblio/28407147]]) takes a diploid +assembly and outputs a reference and an alternative assembly for each haplotype. + +[[!inline pages="tagged(assembly)" actions="no" limit=0]] -- 2.47.3