From 837d1f36fb65d0ab641610fc1acf1225265d03a3 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Mon, 21 Feb 2022 13:32:35 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/10.1101_817783.mdwn | 10 ---------- biblio/35155443.mdwn | 21 ++++++++++++++------- tags/Oikopleura.mdwn | 2 +- 3 files changed, 15 insertions(+), 18 deletions(-) delete mode 100644 biblio/10.1101_817783.mdwn diff --git a/biblio/10.1101_817783.mdwn b/biblio/10.1101_817783.mdwn deleted file mode 100644 index 19aeb21e..00000000 --- a/biblio/10.1101_817783.mdwn +++ /dev/null @@ -1,10 +0,0 @@ -[[!meta title="Evolution of multiple CDK1 paralogs towards specializations in late cell cycle events in a lineage with fast developing planktonic embryos."]] -[[!tag Oikopleura bioRxiv]] - -bioRxiv 817783; doi: https://doi.org/10.1101/817783 - -Xiaofei Ma. Jan Inge Øvrebø, Eric M Thompson. - -Evolution of multiple CDK1 paralogs towards specializations in late cell cycle events in a lineage with fast developing planktonic embryos. - -[[!doi 10.1101/817783 desc="“Interspecies clustering of CDK1 paralogs [show] conservation of their intron-exon structures” “_O. dioica_ CDK1a and b locate on the same autosome whereas CDK1c is present on a different autosome that also contains CDK1e. CDK1d is found on the X chromosome where, at a distance of 5 MB, the CycBa locus is also located.” “The PSTAIRE helix is modified in all Oikopleura CDK1 paralogs whereas Oikopleura CDK2s retain the canonical PSTAIRE sequence. All of the 17 identified Oikopleura CDK1 sequences share the A48S substitution.”"]] diff --git a/biblio/35155443.mdwn b/biblio/35155443.mdwn index 17fb5b87..b72efcd0 100644 --- a/biblio/35155443.mdwn +++ b/biblio/35155443.mdwn @@ -7,10 +7,17 @@ Front Cell Dev Biol. 2022 Jan 28;9:770939. doi:10.3389/fcell.2021.770939 Evolution of CDK1 Paralog Specializations in a Lineage With Fast Developing Planktonic Embryos. -[[!pmid desc="The last common ancestors of all oiks probably had only one CDK1 -as _Fritillaria borealis_ also has only 1. Oiks in general have 3 paralogs -(_a_, _b_, _c_), and _O. dioica_ has 5 (_a_, _b_, _c_, plus _d_ and _e_ which -appear to originate from _c_). They are found on chr1 (_c_, _e_), chr2, (_a_, -_b_) and the XSR of chr3 (_d_). CycBa is also found on the XSR, and interacts -with CDK1d for functions essential to meiosis of oocytes. In contrary to the -ancestral CDK1 in other animals, the levels of CDK1d oscillate."]] +[[!pmid 35155443 desc="The last common ancestors of all oiks probably had only +one CDK1 as _Fritillaria borealis_ also has only 1. Oiks in general have 3 +paralogs (_a_, _b_, _c_), and _O. dioica_ has 5 (_a_, _b_, _c_, plus _d_ and +_e_ which appear to originate from _c_). They are found on chr1 (_c_, _e_), +chr2, (_a_, _b_) and the XSR of chr3 (_d_). CycBa is also found on the XSR, +and interacts with CDK1d for functions essential to meiosis of oocytes. In +contrary to the ancestral CDK1 in other animals, the levels of CDK1d oscillate. +“Interspecies clustering of CDK1 paralogs [show] conservation of their +intron-exon structures” “O. dioica CDK1a and b locate on the same autosome +whereas CDK1c is present on a different autosome that also contains CDK1e. +CDK1d is found on the X chromosome where, at a distance of 5 MB, the CycBa +locus is also located.” “The PSTAIRE helix is modified in all Oikopleura CDK1 +paralogs whereas Oikopleura CDK2s retain the canonical PSTAIRE sequence. All of +the 17 identified Oikopleura CDK1 sequences share the A48S substitution.”"]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index a05e4d9f..246fb151 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -211,7 +211,7 @@ Genes and pathways [[Feng & Thompson, 2018|biblio/29969934]]). - _O. dioica_ CDK1a and b locate on LG2; CDK1c and is CDK1e on LG1. CDK1d is on the X chromosome near CycBa. In _O. albicans_, CDK1a,b and c are - on the same chromosome ([[Ma, Øvrebø and Thompson, 2019|biblio/10.1101_817783]]). + on the same chromosome ([[Ma, Øvrebø and Thompson, 2022|biblio/35155443]]), - _O. dioica_, like other deuterostomes, has acid-sensing ion channels (ASICs). They are expressed in the nervous system ([[Lynagh et al., 2018|biblio/30061402]]). - Some muscle genes were duplicated in the _Oikopleura_ stem lineage -- 2.47.3