From 68a1eaf4f31261fb39d48c2754981bdbba6804c1 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Wed, 12 Nov 2025 15:15:11 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9=20and=20foccacia?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/34289044.mdwn | 10 ++++++++++ biblio/40349337.mdwn | 10 ++++++++++ 2 files changed, 20 insertions(+) create mode 100644 biblio/34289044.mdwn create mode 100644 biblio/40349337.mdwn diff --git a/biblio/34289044.mdwn b/biblio/34289044.mdwn new file mode 100644 index 00000000..029c9244 --- /dev/null +++ b/biblio/34289044.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support"]] +[[!tag ANI]] + +Gosselin S, Fullmer MS, Feng Y, Gogarten JP. + +Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support. + +Syst Biol. 2022 Feb 10;71(2):396-409. doi:10.1093/sysbio/syab060 + +[[!pmid 34289044 desc="“The distance (abbreviated Total Average Nucleotide Identity, or tANI) was calculated by using the formula: tANI -ln(AF*ANI). The natural log added to this calculation counteracts saturation for low AF*ANI values” Mostly tested on bacteria but also briefly on primates and yeasts"]] diff --git a/biblio/40349337.mdwn b/biblio/40349337.mdwn new file mode 100644 index 00000000..3e94ef4a --- /dev/null +++ b/biblio/40349337.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves."]] +[[!tag cephalochordate pangenome]] + +Liu S, Shi C, Chen C, Tan Y, Tian Y, Macqueen DJ, Li Q. + +Cell Rep. 2025 May 27;44(5):115697. doi:10.1016/j.celrep.2025.115697 + +Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves. + +[[!pmid 40349337 desc=""]] -- 2.47.3