From 1e35406443c1acff50086f5a3c50eb8bd411a5a5 Mon Sep 17 00:00:00 2001 From: Charles Plessy Date: Fri, 18 Jun 2021 11:15:00 +0900 Subject: [PATCH] Accession numbers, typos, ... --- tags/Ciona.mdwn | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/tags/Ciona.mdwn b/tags/Ciona.mdwn index 25dd9e73..f8d5002c 100644 --- a/tags/Ciona.mdwn +++ b/tags/Ciona.mdwn @@ -20,7 +20,7 @@ during the Pliocene (≈ 3.8 Ma); a recent introgression then happened 15,000 years ago ([[Roux and coll., 2013|biblio/23564941]]). The _C. intermedia_ species was described by [[Mastrototaro and coll., -2021|biblio/10.1093_zoolinnean_zlaa042]]. It is sister to _C. edwardsi_ +2020|biblio/10.1093_zoolinnean_zlaa042]]. It is sister to _C. edwardsi_ but their placement regarding to _C. int_ and _robusta_ varies in different computations presented in that work. @@ -64,8 +64,9 @@ with respcet to _C. roulei_ ([[Nydam and Harrison, 2010|biblio/20403444]]). ## Genomes - - _Ciona robusta_ latest genome: version HT ([[Satou and coll., - 2019|biblio/31621849]]) is a reassembly of the KS genome using Hi-C and + - _Ciona robusta_ latest genome: version HT + [GCA_009617815](https://www.ncbi.nlm.nih.gov/assembly/GCA_009617815.1/) + ([[Satou and coll., 2019|biblio/31621849]]) is a reassembly of the KS genome using Hi-C and PacBio additional data, in which over 95 % of the dequences is included in chromosomes. Out of 14 pairs of chromosomes, 10 are metacentric ([[Shoguchi and coll., 2005|biblio/15930823]]); the Hi-C contact map suggests that their @@ -73,7 +74,9 @@ with respcet to _C. roulei_ ([[Nydam and Harrison, 2010|biblio/20403444]]). Inter-chromosomal contacts are much more rare in comparison. - _Ciona intestinalis_: chromosome-level assemblies of two individuals - ([[Satou and coll., 2021|biblio/]]) suggests that there are ~20 inversions + [GCA_018327805](https://www.ncbi.nlm.nih.gov/assembly/GCA_018327805.1) + [GCA_018327825](https://www.ncbi.nlm.nih.gov/assembly/GCA_018327825.1) + ([[Satou and coll., 2021|biblio/33822040]]) suggests that there are ~20 inversions (containing at least 3 genes) between the two species. Some of them are not fixed. -- 2.47.3