From 08d47740b91969c596f296188a518240086cd3b5 Mon Sep 17 00:00:00 2001 From: Charles Date: Thu, 17 Sep 2020 17:48:22 +0900 Subject: [PATCH] =?utf8?q?Caf=C3=A9?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- biblio/32211845.mdwn | 10 ++++++++++ tags/Oikopleura.mdwn | 6 ++++-- 2 files changed, 14 insertions(+), 2 deletions(-) create mode 100644 biblio/32211845.mdwn diff --git a/biblio/32211845.mdwn b/biblio/32211845.mdwn new file mode 100644 index 00000000..be4874ee --- /dev/null +++ b/biblio/32211845.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata."]] +[[!tag Oikopleura]] + +DeBiasse MB, Colgan WN, Harris L, Davidson B, Ryan JF. + +Genome Biol Evol. 2020 Jun 1;12(6):948-964. doi:10.1093/gbe/evaa060 + +Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata. + +[[!pmid 32211845 desc="210 single-copy orthogroups from 37 tunicates + 10 outgroups. Questions the annotation (gene name) of the Hox genes in Oikopleura."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index 66ac8c68..bf2df3f6 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -40,8 +40,10 @@ Phylogeny long-branch attraction ([[Tsagkogeorga et al, 2009|biblio/19656395]]). - Studies based on 146 genes in 28 species ([[Delsuc et al., 2006|biblio/16495997]]), on 798 genes in 28 species ([[Kocot and coll., 2018|biblio/29330139]]), - and 258 orthologous proteins from 63 species ([[Delsuc et al., 2018|biblio/29653534]]) - show that Oikopleuridae is sister to all other tunicates. + 258 orthologous proteins from 63 species ([[Delsuc et al., 2018|biblio/29653534]]), + and 210 single-copy orthogroups from 37 tunicates + 10 outgroups + [[DeBiasse and coll., 2020|biblio/32211845]] show that appendicularians are + sister to all other tunicates. - “The difference between coding sequences was considerably higher in comparisons between strains of different oceans than within the Bergen gene pool. We ignore whether and how Oikopleura dioica is subdivided into multiple -- 2.47.3