From: Charles Plessy Date: Mon, 28 Oct 2019 04:50:33 +0000 (+0900) Subject: Published in PLoS Comput Biol. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=ffef612c41a0d0844f79ac824a0e5265f280f81a;p=source%2F.git Published in PLoS Comput Biol. --- diff --git a/biblio/10.1101_261149.mdwn b/biblio/10.1101_261149.mdwn deleted file mode 100644 index cf7b5e55..00000000 --- a/biblio/10.1101_261149.mdwn +++ /dev/null @@ -1,10 +0,0 @@ -[[!meta title="Integrating Hi-C links with assembly graphs for chromosome-scale assembly"]] -[[!tag genome assembly method]] - -Jay Ghurye, Arang Rhie, Brian P. Walenz, Anthony Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren - -bioRxiv, first February 07, 2018. - -Integrating Hi-C links with assembly graphs for chromosome-scale assembly - -[[!doi 10.1101/261149 desc="Uses unitigs and the assembly graph as input."]] diff --git a/biblio/31433799.mdwn b/biblio/31433799.mdwn new file mode 100644 index 00000000..2955057e --- /dev/null +++ b/biblio/31433799.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Integrating Hi-C links with assembly graphs for chromosome-scale assembly"]] +[[!tag genome assembly method]] + +PLoS Comput Biol. 2019 Aug 21;15(8):e1007273. doi:10.1371/journal.pcbi.1007273 + +Jay Ghurye, Arang Rhie, Brian P. Walenz, Anthony Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren + +Integrating Hi-C links with assembly graphs for chromosome-scale assembly + +[[!pmid 31433799 desc="Uses unitigs and the assembly graph as input."]] diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index b9f86208..9d5a0012 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -42,7 +42,7 @@ SALSA (Simple AssembLy ScAffolder, [[Ghurye and coll., 2017|biblio/28701198]]) takes Hi-C data and contigs as input and scaffolds them under the hypothesis that most contact points are due to local (same-chromosome) proximity. Version 2 of SALSA uses unitigs and the assembly graph as input ([[Ghurye and coll., -2018|biblio/10.1101_261149]]). +2019|biblio/31433799]]). BUSCO ([[Simão and coll., 2015|biblio/26059717]], [[Waterhouse and coll., 2017|biblio/29220515]]) assesses the presence of evolutionary conserved single-copy