From: Charles Plessy Date: Wed, 11 Sep 2019 01:32:44 +0000 (+0900) Subject: Intercistronic regions. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=fea5f0122668bdc69eb9c98da52bdb7aedb313ba;p=source%2F.git Intercistronic regions. --- diff --git a/biblio/15314184.mdwn b/biblio/15314184.mdwn index b45e7b36..f03ae638 100644 --- a/biblio/15314184.mdwn +++ b/biblio/15314184.mdwn @@ -7,4 +7,4 @@ Mol Cell Biol. 2004 Sep;24(17):7795-805. doi:10.1128/MCB.24.17.7795-7805.2004 Spliced-Leader RNA trans Splicing in a Chordate, Oikopleura dioica, with a Compact Genome. -[[!pmid 15314184 desc="5′ splice leader (SL) found in 90/158 ESTs containing a start codon. The SL RNA is found downstream of the 5S RNA in at least 40 occurences, and aproximately 2/3 of all the 5S rRNA genes. Its sequence is ACTCATCCCATTTTTGAGTCCGATTTCGATTGTCTAACAG. O. doica is the first chordate where gene operons have been described."]] +[[!pmid 15314184 desc="5′ splice leader (SL) found in 90/158 ESTs containing a start codon. The SL RNA is found downstream of the 5S RNA in at least 40 occurences, and aproximately 2/3 of all the 5S rRNA genes. Its sequence is ACTCATCCCATTTTTGAGTCCGATTTCGATTGTCTAACAG. O. doica is the first chordate where gene operons have been described. Intercistronic regions are very short (<30 nt)."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index 116075fa..8aed996e 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -236,8 +236,8 @@ Transcriptome - O. dioica is the first chordate where gene operons have been described. A 40-nt 5′ [[splice leader|tags/trans-splicing]] (SL) bearing a trimethylated cap is found in some RNAs. The SL gene is found downstream of the 5S RNA gene, which is repeated multiple - times in the genome. The 3′ acceptor site has a strong UUU(C/U/A)AG consensus - ([[Ganot et al., 2004|biblio/15314184]]). + times in the genome. The 3′ acceptor site has a strong UUU(C/U/A)AG consensus. + Reported intercistronic regions are short (<30 nt) ([[Ganot et al., 2004|biblio/15314184]]). - The splice leader found in the Norwegian strain by ([[Ganot et al., 2004|biblio/15314184]]) was found indentical in a Japanese strain by ([[Wang and coll., 2015|biblio/26032664]]). - A study using CAGE found that 39% of annotated gene models are trans-spliced with the