From: Charles Plessy Date: Mon, 2 May 2022 06:59:03 +0000 (+0900) Subject: Now in PubMed. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=fa92d7c67a9609eade12eaba7b36d70c05a2a873;p=setup%2F.git Now in PubMed. --- diff --git a/biblio/10.1101_2020.12.23.423594.mdwn b/biblio/10.1101_2020.12.23.423594.mdwn deleted file mode 100644 index 77093509..00000000 --- a/biblio/10.1101_2020.12.23.423594.mdwn +++ /dev/null @@ -1,10 +0,0 @@ -[[!meta title="SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data"]] -[[!tag Oikopleura bioRxiv]] - -Marius Wenzel, Berndt Mueller, Jonathan Pettitt - -bioRxiv 2020.12.23.423594; doi:10.1101/2020.12.23.423594 - -SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data - -[[!doi 10.1101/2020.12.23.423594 desc="Median intercistronic distance of 33 nt in Oikopleura. Calculated as the the distance between two “gene” annotations."]] diff --git a/biblio/33752599.mdwn b/biblio/33752599.mdwn new file mode 100644 index 00000000..88029aa7 --- /dev/null +++ b/biblio/33752599.mdwn @@ -0,0 +1,10 @@ +[[!meta title="SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data"]] +[[!tag Oikopleura trans-splicing]] + +Marius Wenzel, Berndt Mueller, Jonathan Pettitt + +bioRxiv 2020.12.23.423594; doi:10.1101/2020.12.23.423594 + +SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data + +[[!doi 10.1101/2020.12.23.423594 desc="Median intercistronic distance of 33 nt in Oikopleura. Calculated as the the distance between two “gene” annotations."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index f30ea46a..b64a39a4 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -319,7 +319,7 @@ Transcriptome The SL gene is found downstream of the 5S RNA gene, which is repeated multiple times in the genome. The 3′ acceptor site has a strong UUU(C/U/A)AG consensus. Reported intercistronic regions are short: <30 nt ([[Ganot et al., 2004|biblio/15314184]]) - or ~33 nt ([[Wenzel, Mueller and Pettitt, 2020|biblio/10.1101_2020.12.23.423594]]). + or ~33 nt ([[Wenzel, Mueller and Pettitt, 2020|biblio/33752599]]). - The splice leader found in the Norwegian strain by ([[Ganot et al., 2004|biblio/15314184]]) was found indentical in a Japanese strain by ([[Wang and coll., 2015|biblio/26032664]]). - A study using CAGE found that 39% of annotated gene models are trans-spliced with the