From: Charles Plessy Date: Wed, 8 Sep 2021 09:11:07 +0000 (+0900) Subject: GOC X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=f828c3445bff99f4d70a43bb134160faad5c4bce;p=setup%2F.git GOC --- diff --git a/biblio/14585609.mdwn b/biblio/14585609.mdwn new file mode 100644 index 00000000..c51736d2 --- /dev/null +++ b/biblio/14585609.mdwn @@ -0,0 +1,10 @@ +[[!meta title="DNA repeats lead to the accelerated loss of gene order in bacteria."]] +[[!tag synteny]] + +Rocha, Eduardo P C. + +Trends Genet. 2003 Nov;19(11):600-3. doi:10.1016/j.tig.2003.09.011 + +DNA repeats lead to the accelerated loss of gene order in bacteria. + +[[!pmid 14585609 desc="Defines a Gene Order Conservation (GOC) number as: “the average number of orthologues for which the consecutive orthologue co-occurs close by in the other genome. It varies between 0 (no co-occurrence) and 1 (complete gene order conservation)”."]] diff --git a/tags/synteny.mdwn b/tags/synteny.mdwn index 296a3a30..5ec7e063 100644 --- a/tags/synteny.mdwn +++ b/tags/synteny.mdwn @@ -50,4 +50,11 @@ two species [[Mudd and coll, 2020|biblio/32873878]]. - The ancestral amniote has 49 chromosomes ([[Sacerdot and coll., 2018|biblio/30333059]]). +### Computational aspects + + - [[Rocha (2003)|biblio/14585609]] defines a Gene Order Conservation (GOC) + number as: “the average number of orthologues for which the consecutive + orthologue co-occurs close by in the other genome. It varies between 0 (no + co-occurrence) and 1 (complete gene order conservation)”. + [[!inline pages="tagged(synteny)" limit=0]]