From: Charles Plessy Date: Thu, 30 Jan 2020 06:59:02 +0000 (+0900) Subject: Purge Haplotigs does not merge contigs. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=ee613cd57cf7dcc6a28c01093b2ab8eb88b1d6c6;p=source%2F.git Purge Haplotigs does not merge contigs. --- diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index 0dbe7275..268d2911 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -43,7 +43,7 @@ assembly_”. Purge Haplotigs ([[Roach, Schmidt and Borneman (2018) |biblio/30497373]]) is an alternative to HaploMerger that takes read coverage into account when detecting -potential haplotigs. +potential haplotigs. However, it does not merge haplotypes. SALSA (Simple AssembLy ScAffolder, [[Ghurye and coll., 2017|biblio/28701198]]) takes Hi-C data and contigs as input and scaffolds them under the hypothesis