From: Charles Date: Wed, 24 Jun 2020 06:30:08 +0000 (+0900) Subject: Café X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=d9dbe7aa4f5253444329bb72f3e1a1600e6686b0;p=setup%2F.git Café --- diff --git a/biblio/32205368.mdwn b/biblio/32205368.mdwn new file mode 100644 index 00000000..4ac75659 --- /dev/null +++ b/biblio/32205368.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics."]] +[[!tag Oikopleura eDNA]] + +Vorobev A, Dupouy M, Carradec Q, Delmont TO, Annamalé A, Wincker P, Pelletier E. + +Genome Res. 2020 Apr;30(4):647-659. doi:10.1101/gr.253070.119 + +Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. + +[[!pmid 32205368 desc="Metagenomics-based transcriptomes (MGTs): metatranscriptomic-based unigenes of the MATOU-v1 catalog detected by metagenomic reads mapping in at least three different Tara Oceans samples and displaying no more than 90% of their total genomic occurrence signal in a single sample, grouped based on the covariation of their genomic abundance across the samples, with a minimum of 500 unigenes per group. Oikopleuridae detected (Figure 1)."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index 10221c2c..8634c0d0 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -589,7 +589,7 @@ Ecology (with oral gland cells and ~8 to 14 subchordal cells). - Indian ocean near Australia: detected in eDNA sequencing of 18S rRNA ([[Berry and coll., 2019|biblio/30735490]]) - + - TARA Oceans ([[Vorobev and coll., 2020|biblio/32205368]]). Laboratory culture ------------------ diff --git a/tags/eDNA.mdwn b/tags/eDNA.mdwn index 8187c113..289530cb 100644 --- a/tags/eDNA.mdwn +++ b/tags/eDNA.mdwn @@ -4,5 +4,6 @@ [[Berry and coll., 2019|biblio/30735490]]. - Oikopleura 18S detected in at least one MiSeq run from [[Djurhuus and coll. 2020|biblio/31937756]] + - Oikopleuridae detected in TARA Oceans ([[Vorobev and coll., 2020|biblio/32205368]]). [[!inline pages="tagged(eDNA)" limit=0]]