From: Charles Date: Fri, 8 Mar 2019 04:27:42 +0000 (+0900) Subject: Mitochondrion X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=d8c0536452b28f8505b59c9074b7bdbc82965387;p=source.git Mitochondrion --- diff --git a/biblio/28369459.mdwn b/biblio/28369459.mdwn new file mode 100644 index 00000000..99464807 --- /dev/null +++ b/biblio/28369459.mdwn @@ -0,0 +1,12 @@ +[[!meta title="de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer."]] +[[!tag Nanopore yeast mitochondrion]] + +Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, +Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, +Aury JM. + +Gigascience. 2017 Feb 1;6(2):1-13. doi:10.1093/gigascience/giw018 + +de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer. + +[[!pmid 28369459 desc="Assembled mitochondrial genomes with ABruijn."]] diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index 17773727..b36d5f8c 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -13,6 +13,10 @@ The Flye assembler ([[Kolmogorov and coll, bioRxiv contigs using long error-prone reads, untangles the graph by resolving repeats, and then uses it to refine the contings and increase their accuracy. +The predecessor of Flye, ABruijn, was reported by [[Istace and coll. +(2017)|biblio/28369459]] to be able to assemble mitochondrial genomes (unlike +Canu and other assemblers). + When coverage is too low for efficient reference-free assembly, related references can be used as a guide. The Ragout software ([[Kolmogorov and coll., 2014|biblio/24931998), [[Kolmogorov and coll., 2018|biblio/30341161]])