From: Charles <charles.plessy@oist.jp>
Date: Wed, 3 Feb 2021 22:06:14 +0000 (+0900)
Subject: Café
X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=bfe2d49d63bd63ddcc79e7813eece3d52a1ba0aa;p=source%2F.git

Café
---

diff --git a/biblio/10.1101_2021.01.25.428050.mdwn b/biblio/10.1101_2021.01.25.428050.mdwn
new file mode 100644
index 00000000..b9592bb0
--- /dev/null
+++ b/biblio/10.1101_2021.01.25.428050.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Improved DNA-versus-Protein Homology Search for Protein Fossils"]]
+[[!tag bioRxiv LAST repeat]]
+
+Yin Yao, Martin C. Frith
+
+bioRxiv 2021.01.25.428050; doi: https://doi.org/10.1101/2021.01.25.428050
+
+Improved DNA-versus-Protein Homology Search for Protein Fossils
+
+[[!doi 10.1101/2021.01.25.428050 desc="Uses a 64 x 21 substitution matrix and automatically learns the genetic code.  Detected fossils of the polinton and DIRS/Ngaro repeat elements in the human genome.  10 times faster than blastx."]]
diff --git a/tags/LAST.mdwn b/tags/LAST.mdwn
index f02c8785..c6fbd8f4 100644
--- a/tags/LAST.mdwn
+++ b/tags/LAST.mdwn
@@ -21,4 +21,7 @@ _bibliography in progress..._
  - `tandem-genotypes` ([[Mitsuhashi and coll., 2019|biblio/30890163]]): detection
    of expansion of tandem repeats, after alignment with `last-split`.
 
+ - LAST can align DNA sequences to protein databases using a 64 x 21 substitution
+   matrix [[Yao and Frith, 2020|biblio/10.1101_2021.01.25.428050]].
+
 [[!inline pages="tagged(LAST)" actions="no" limit=0]]