From: Charles Plessy Date: Thu, 6 Jan 2022 04:09:58 +0000 (+0900) Subject: Café X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=b2f78e91f65d74e906ee004c7395318878596bfd;p=source.git Café --- diff --git a/biblio/34934012.mdwn b/biblio/34934012.mdwn new file mode 100644 index 00000000..cdbb799c --- /dev/null +++ b/biblio/34934012.mdwn @@ -0,0 +1,10 @@ +[[!meta title="AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication."]] +[[!tag genome alignment software]] + +Song B, Marco-Sola S, Moreto M, Johnson L, Buckler ES, Stitzer MC. + +Proc Natl Acad Sci U S A. 2022 Jan 4;119(1):e2113075119. doi:10.1073/pnas.2113075119 + +AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication. + +[[!pmid desc=""1) Maps a transcriptome to its reference genome. 2) Extracts "anchor" coding sequences. 3) Searches for homologous sequences in the query genome. 4) Realigns the sequences between homologous anchors. The so-called comparison to LAST is actually a comparison with LAST + AxtChain, that is: it does not use last-split.]]