From: Charles Plessy Date: Mon, 13 Feb 2023 04:27:59 +0000 (+0900) Subject: Café X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=aece98a0633823b0cfb2e914f71cf1fb5a63bc1f;p=setup%2F.git Café --- diff --git a/biblio/21685081.mdwn b/biblio/21685081.mdwn new file mode 100644 index 00000000..3a9ffeb7 --- /dev/null +++ b/biblio/21685081.mdwn @@ -0,0 +1,10 @@ +[[!meta title="PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions."]] +[[!tag genome alignment]] + +Lin MF, Jungreis I, Kellis M. + +Bioinformatics. 2011 Jul 1;27(13):i275-82. doi: 10.1093/bioinformatics/btr209 + +PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions. + +[[!pmid 21685081 desc="Classifies coding and non-coding regions using multiple genome sequence alignments and the fit with separate codon score matrices for coding an non-coding."]] diff --git a/tags/alignment.mdwn b/tags/alignment.mdwn index 89b1ef03..b98b01be 100644 --- a/tags/alignment.mdwn +++ b/tags/alignment.mdwn @@ -21,4 +21,8 @@ see [[LAST]] for a detailed bibliography. an iterative approach where ancestral genomes are reconstituted using 2-5 pairs of in- and out-group comparisons, and then progressively aligned to each other. +## Consumers of multiple genome sequence alignments + + - PhyloCSF ([[Lin, Jungreis and Kellis (2011)|biblio/21685081]]). + [[!inline pages="tagged(alignment)" limit=0]]