From: Charles <charles.plessy@oist.jp>
Date: Thu, 10 Jan 2019 04:37:40 +0000 (+0900)
Subject: Café
X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=a19ff7040e692d5848c77b1da55b1cfdecaffbdd;p=source%2F.git

Café
---

diff --git a/biblio/28407147.mdwn b/biblio/28407147.mdwn
new file mode 100644
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+[[!meta title="HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly."]]
+[[!tag assembly]]
+
+Huang S, Kang M, Xu A.
+
+Bioinformatics. 2017 Aug 15;33(16):2577-2579. doi:10.1093/bioinformatics/btx220
+
+HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
+
+[[!pmid 28407147 desc="Produces a reference and an alternate assembly.  Scaffolding is improved by cross-comparison of the assemblies."]]
diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
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--- a/tags/assembly.mdwn
+++ b/tags/assembly.mdwn
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 [[!meta title="pages tagged assembly"]]
 
-[[!inline pages="tagged(assembly)" actions="no" archive="yes"
-feedshow=10]]
+# Genome assembly software
+
+_In progress..._
+
+The HaploMerger2 pipeline ([[Huang and coll., 2017|biblio/28407147]]) takes a diploid
+assembly and outputs a reference and an alternative assembly for each haplotype.
+
+[[!inline pages="tagged(assembly)" actions="no" limit=0]]