From: Charles Plessy Date: Wed, 26 Jan 2022 02:48:54 +0000 (+0900) Subject: CNEr X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=9fcfe35413a0db0f2ca53337de651da8938dc860;p=source%2F.git CNEr --- diff --git a/biblio/31449516.mdwn b/biblio/31449516.mdwn new file mode 100644 index 00000000..b23382ea --- /dev/null +++ b/biblio/31449516.mdwn @@ -0,0 +1,10 @@ +[[!meta title="CNEr: A toolkit for exploring extreme noncoding conservation."]] +[[!tag enhancer software ]] + +Tan G, Polychronopoulos D, Lenhard B. + +PLoS Comput Biol. 2019 Aug 26;15(8):e1006940. + +CNEr: A toolkit for exploring extreme noncoding conservation. + +[[!pmid 31449516 desc="Takes genome alignments in Axt format as input."]] diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index bafbfec1..987f4ede 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -77,7 +77,8 @@ and coll., 2015|biblio/25940625]], Marie-Nelly and coll., 2014(not read)). Assemblies can be aligned with [[last-dotplot|LAST]] or, for SVG export and interactive browsing with D-GENIES ([[Cabanettes and Klopp -2018|biblio/29888139]]). +2018|biblio/29888139]]). The CNEr package [[Tan, Polychronopoulos and Lenhard, 2019|biblio/31449516]] +can be used to search for conserved non-coding elements. BUSCO ([[Simão and coll., 2015|biblio/26059717]], [[Waterhouse and coll., 2017|biblio/29220515]]) assesses the presence of evolutionary conserved