From: Charles Plessy Date: Thu, 27 Apr 2023 09:19:31 +0000 (+0900) Subject: outliers X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=9fb789485ac50f5915b0a2d44a0705428976c4ba;p=setup%2F.git outliers --- diff --git a/biblio/22925495.mdwn b/biblio/22925495.mdwn new file mode 100644 index 00000000..6669e60c --- /dev/null +++ b/biblio/22925495.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage."]] +[[!tag genome chromosome repeats]] + +Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, Vandepoele K. + +Genome Biol. 2012 Aug 24;13(8):R74. doi:10.1186/gb-2012-13-8-r74 + +Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. + +[[!pmid 22925495 desc="7,847 genes, no transposons. Two “outlier” chromosomes are found with lower GC content, like in _Ostreococcus_ and _Micromonas_. Genes in the big outlier chromosomes have a high number of small AT-rich introns with no apparent conserved motifs."]] diff --git a/tags/chromosome.mdwn b/tags/chromosome.mdwn index 288710cd..ac6a4887 100644 --- a/tags/chromosome.mdwn +++ b/tags/chromosome.mdwn @@ -6,7 +6,9 @@ _in progressss_ Two (out of 20) chromosomes in the genome of the unicellular green alga _Ostreococcus tauri_ have a markedly different GC and transposable element -content compared to the others. [[Derelle et al., 2003|biblio/16868079]]. +content compared to the others. [[Derelle and coll., 2003|biblio/16868079]]. +The same phenomeon has then been reported in _Bathycoccus prasinos_ ([[Moreau +and coll., 2012|biblio/22925495]]) and other species. Chr4 in _Polypedilum vanderplanki_ has lower GC content than the others ([[Yoshida et al., 2022|biblio/35387384]]), and it has been speculated that it