From: Charles Plessy Date: Wed, 24 Feb 2021 06:15:50 +0000 (+0900) Subject: Bandage X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=9ccb9903f37a99e2ffd62eddb5e70aeb465ba635;p=source%2F.git Bandage --- diff --git a/biblio/26099265.mdwn b/biblio/26099265.mdwn new file mode 100644 index 00000000..97f3042e --- /dev/null +++ b/biblio/26099265.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Bandage: interactive visualization of de novo genome assemblies."]] +[[!tag assembly]] + +Wick RR, Schultz MB, Zobel J, Holt KE. + +Bioinformatics. 2015 Oct 15;31(20):3350-2. doi:10.1093/bioinformatics/btv383 + +Bandage: interactive visualization of de novo genome assemblies. + +[[!pmid 26099265 desc="Interactive visualisation and command-line generation of reports."]] diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index 8d4962e3..79f5f2d7 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -23,6 +23,9 @@ fast. Shasta assemblies tend to be more fragmented, but have less disagreement with the reference. Shasta also comes with polishing modules similar to Racon and Medaka, but also to be faster. +Some genome assemblers produce a graph file that can be visualised +with tools such as Bandage [[Wick and coll., 2015|biblio/26099265]]. + After assembly, the contigs can be further polished with Racon ([[Vaser, Sović, Nagarajan and Šikić, 2017|biblio/28100585]]).