From: Charles Plessy Date: Fri, 7 Feb 2020 06:20:08 +0000 (+0900) Subject: Contacts between paired chromosome arms in Ciona. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=87f9ea034049cdd28dee24249535f24dda7d4291;p=source.git Contacts between paired chromosome arms in Ciona. --- diff --git a/biblio/15930823.mdwn b/biblio/15930823.mdwn new file mode 100644 index 00000000..6f236327 --- /dev/null +++ b/biblio/15930823.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Molecular cytogenetic characterization of Ciona intestinalis chromosomes."]] +[[!tag ciona chromosome]] + +Zoolog Sci. 2005 May;22(5):511-6 doi:10.2108/zsj.22.511 + +Shoguchi E, Kawashima T, Nishida-Umehara C, Matsuda Y, Satoh N. + +Molecular cytogenetic characterization of Ciona intestinalis chromosomes. + +[[!pmid 15930823 desc="Ciona intestinalis has 10 metacentric pairs and 8 submetacentric or subtelomeric pairs of chromosomes."]] diff --git a/tags/Ciona.mdwn b/tags/Ciona.mdwn index 5b05baee..aa1838e7 100644 --- a/tags/Ciona.mdwn +++ b/tags/Ciona.mdwn @@ -42,7 +42,10 @@ recent introgression then happened 15,000 years ago ([[Roux and coll., Latest _Ciona robusta_ genome: version HT ([[Satou and coll., 2019|biblio/31621849]]) is a reassembly of the KS genome using Hi-C and PacBio additional data, in which over 95 % of the dequences is included in -chromosomes. +chromosomes. Out of 14 pairs of chromosomes, 10 are metacentric ([[Shoguchi +and coll., 2005|biblio/15930823]]); the Hi-C contact map suggests that their +arms interact with each other almost as much as with themselves. +Inter-chromosomal contacts are much more rare in comparison. Mitochondrial gene order differs even within the _Ciona_ genus ([[Gissi, Iannelli and Pesole 2004|biblio/15114417]]).