From: Charles Plessy Date: Tue, 27 Feb 2024 07:29:08 +0000 (+0900) Subject: microsynteny mixing score X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=830fd1b44d40e74382ce4fa8b7b19c8fb12df89a;p=source--%2F.git microsynteny mixing score --- diff --git a/biblio/10.1101_2024.02.15.580425.mdwn b/biblio/10.1101_2024.02.15.580425.mdwn new file mode 100644 index 00000000..3df64157 --- /dev/null +++ b/biblio/10.1101_2024.02.15.580425.mdwn @@ -0,0 +1,12 @@ +[[!meta title=" Fusion, fission, and scrambling of the bilaterian genome in Bryozoa"]] +[[!tag bioRxiv synteny]] + +Thomas D. Lewin, Isabel Jiah-Yih Liao, Mu-En Chen, John D. D. Bishop, Peter W. H. Holland, Yi-Jyun Luo + +bioRxiv 2024.02.15.580425; doi:10.1101/2024.02.15.580425 + +Fusion, fission, and scrambling of the bilaterian genome in Bryozoa. + +[[!doi 10.1101/2024.02.15.580425 desc="Defines a “microsynteny mixing score” as +1 minus the absolute value of the spearman correlation coefficient of the +ranked positions of orthologous genes on orthologous chromosome pairs."]] diff --git a/tags/synteny.mdwn b/tags/synteny.mdwn index 98f5d95b..6672f561 100644 --- a/tags/synteny.mdwn +++ b/tags/synteny.mdwn @@ -105,6 +105,11 @@ can be observed in fungi even when ITS sequences are 100% identical. that a given gene has its orthologue in a homologous chromosome of a related species. + - [[Lewin and coll., 2024|biblio/10.1101_2024.02.15.580425]] defined a + “microsynteny mixing score” as 1 minus the Spearman correlation coefficient + of the ranked positional indices of orthologous genes on orthologous + chromosomes. + - “Chains” and “nets” of pairwise alignements between two genomes are described in [[Kent and coll, 2003|biblio/14500911]].