From: Charles Plessy Date: Wed, 12 Nov 2025 06:15:11 +0000 (+0900) Subject: Café and foccacia X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=68a1eaf4f31261fb39d48c2754981bdbba6804c1;p=source%2F.git Café and foccacia --- diff --git a/biblio/34289044.mdwn b/biblio/34289044.mdwn new file mode 100644 index 00000000..029c9244 --- /dev/null +++ b/biblio/34289044.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support"]] +[[!tag ANI]] + +Gosselin S, Fullmer MS, Feng Y, Gogarten JP. + +Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support. + +Syst Biol. 2022 Feb 10;71(2):396-409. doi:10.1093/sysbio/syab060 + +[[!pmid 34289044 desc="“The distance (abbreviated Total Average Nucleotide Identity, or tANI) was calculated by using the formula: tANI -ln(AF*ANI). The natural log added to this calculation counteracts saturation for low AF*ANI values” Mostly tested on bacteria but also briefly on primates and yeasts"]] diff --git a/biblio/40349337.mdwn b/biblio/40349337.mdwn new file mode 100644 index 00000000..3e94ef4a --- /dev/null +++ b/biblio/40349337.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves."]] +[[!tag cephalochordate pangenome]] + +Liu S, Shi C, Chen C, Tan Y, Tian Y, Macqueen DJ, Li Q. + +Cell Rep. 2025 May 27;44(5):115697. doi:10.1016/j.celrep.2025.115697 + +Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves. + +[[!pmid 40349337 desc=""]]