From: Charles Plessy Date: Tue, 12 Jun 2018 04:05:32 +0000 (+0900) Subject: Proteomics X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=643141beb62dad8d4680b954e6bd2662f1c17816;p=source.git Proteomics --- diff --git a/biblio/21483721.mdwn b/biblio/21483721.mdwn index 40571a41..3cc66b25 100644 --- a/biblio/21483721.mdwn +++ b/biblio/21483721.mdwn @@ -1,5 +1,5 @@ [[!meta title="A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms."]] -[[!tag method microscopy]] +[[!tag method peroxydase microscopy]] PLoS Biol. 2011 Apr;9(4):e1001041. doi:10.1371/journal.pbio.1001041. diff --git a/biblio/23086203.mdwn b/biblio/23086203.mdwn new file mode 100644 index 00000000..92d5ebbd --- /dev/null +++ b/biblio/23086203.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy."]] +[[!tag microscopy peroxydase method]] + +Nat Biotechnol. 2012 Nov;30(11):1143-8. doi:10.1038/nbt.2375 + +Martell JD, Deerinck TJ, Sancak Y, Poulos TL, Mootha VK, Sosinsky GE, Ellisman MH, Ting AY. + +Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy. + +[[!pmid 23086203 desc="APEX: a “genetically encodable EM tag that is active in all cellular compartments and does not require light APEX is a monomeric 28-kDa peroxidase that withstands strong EM fixation to give excellent ultrastructural preservation”."]] diff --git a/biblio/23371551.mdwn b/biblio/23371551.mdwn new file mode 100644 index 00000000..4c768100 --- /dev/null +++ b/biblio/23371551.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging."]] +[[!tag peroxydase method proteomics]] + +Science. 2013 Mar 15;339(6125):1328-1331. doi:10.1126/science.1230593 + +Rhee HW, Zou P, Udeshi ND, Martell JD, Mootha VK, Carr SA, Ting AY. + +Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging. + +[[!pmid 23371551 desc="Uses APEX to bind biotin-phenol tags to proteins."]] diff --git a/biblio/28751582.mdwn b/biblio/28751582.mdwn index 58a2e123..61a2a4d0 100644 --- a/biblio/28751582.mdwn +++ b/biblio/28751582.mdwn @@ -1,5 +1,5 @@ [[!meta title="ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells."]] -[[!tag method chromatin microscopy]] +[[!tag method peroxydase chromatin microscopy]] Science. 2017 Jul 28;357(6349). pii: eaag0025. doi:10.1126/science.aag0025. diff --git a/biblio/29735996.mdwn b/biblio/29735996.mdwn new file mode 100644 index 00000000..a4de362a --- /dev/null +++ b/biblio/29735996.mdwn @@ -0,0 +1,11 @@ +[[!meta title="C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9-APEX2."]] +[[!tag peroxydase method proteomics]] + +Nat Methods. 2018 May 7. doi:10.1038/s41592-018-0006-2 + +Gao XD, Tu LC, Mir A, Rodriguez T, Ding Y, Leszyk J, Dekker J, Shaffer SA, Zhu +LJ, Wolfe SA, Sontheimer EJ. + +C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9-APEX2. + +[[!pmid 29735996 desc="Links APEX2 to Cas9 in order to label protein near target loci. dCas9-APEX2 biotinylation at genomic elements by restricted spatial tagging (C-BERST)"]] diff --git a/biblio/29735997.mdwn b/biblio/29735997.mdwn new file mode 100644 index 00000000..68a28afb --- /dev/null +++ b/biblio/29735997.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling."]] +[[!tag proteomics peroxydase method]] + +Myers SA, Wright J, Peckner R, Kalish BT, Zhang F, Carr SA + +Nat Methods. 2018 May 7. doi:10.1038/s41592-018-0007-1 + +Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling. + +[[!pmid 29735997 desc="Genomic locus proteomics (GLoPro) uses dCas9 to localise APEX to specific loci, where it will biotinylate the proteins in proximity."]]