From: Charles Plessy Date: Mon, 20 Jun 2022 06:50:00 +0000 (+0900) Subject: published X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=633a30200aa9c03b71f4d9b2c53dc4288bab0f7f;p=source%2F.git published --- diff --git a/biblio/10.1101_2020.03.16.993428.mdwn b/biblio/10.1101_2020.03.16.993428.mdwn deleted file mode 100644 index f14b9cc5..00000000 --- a/biblio/10.1101_2020.03.16.993428.mdwn +++ /dev/null @@ -1,10 +0,0 @@ -[[!meta title="Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms"]] -[[!tag bioRxiv assembly benchmark]] - -Nadège Guiglielmoni, Antoine Houtain, Alessandro Derzelle, Karine van Doninck, Jean-François Flot - -bioRxiv 2020.03.16.993428; doi: https://doi.org/10.1101/2020.03.16.993428 - -Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms - -[[!pmid 10.1101/2020.03.16.993428 desc="Benchark using a bdelloid rotifer. Performance of most software plateaus over 50× depth. purge_dups performed well on Flye assemblies. Filtering our shorter reads did not dramatically change the N50 of Flye 2.5 assemblies"]] diff --git a/biblio/34090340.mdwn b/biblio/34090340.mdwn new file mode 100644 index 00000000..bc2ee063 --- /dev/null +++ b/biblio/34090340.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms"]] +[[!tag assembly benchmark]] + +Nadège Guiglielmoni, Antoine Houtain, Alessandro Derzelle, Karine van Doninck, Jean-François Flot + +BMC Bioinformatics. 2021 Jun 5;22(1):303. doi:10.1186/s12859-021-04118-3 + +Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms + +[[!pmid 34090340 desc="Benchark using a bdelloid rotifer. Performance of most software plateaus over 50× depth. purge_dups performed well on Flye assemblies. Filtering our shorter reads did not dramatically change the N50 of Flye 2.5 assemblies"]]