From: Charles Plessy Date: Wed, 8 May 2019 07:15:54 +0000 (+0900) Subject: correction X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=41ca67f30c6bfc1c4e476d483ab05b67b3688ad4;p=setup%2F.git correction --- diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn index db55c0ff..f244ca89 100644 --- a/tags/assembly.mdwn +++ b/tags/assembly.mdwn @@ -8,13 +8,12 @@ Prior assembly, MinIONQC ([[Lanfear and coll., 2018|biblio/30052755]]) allows for the comparison of multiple Nanopore runs on the same plot, to assess if read length is satisfactory. -The Flye assembler ([[Kolmogorov and coll, bioRxiv -2018|biblio/30936562]]) creates an A-Bruijn (assembly) graph from draft -contigs using long error-prone reads, untangles the graph by resolving repeats, -and then uses it to refine the contings and increase their accuracy. (The -predecessor of Flye, ABruijn, was reported by [[Istace and coll. -(2017)|biblio/28369459]] to be able to assemble mitochondrial genomes, unlike -Canu and other assemblers.) +The Flye assembler ([[Kolmogorov and coll. (2018)|biblio/30936562]]) creates an +A-Bruijn (assembly) graph from draft contigs using long error-prone reads, +untangles the graph by resolving repeats, and then uses it to refine the +contings and increase their accuracy. (The predecessor of Flye, ABruijn, was +reported by [[Istace and coll. (2017)|biblio/28369459]] to be able to assemble +mitochondrial genomes, unlike Canu and other assemblers.) After assembly, the contigs can be further polished with Racon ([[Vaser, Sović, Nagarajan and Šikić, 2017|biblio/28100585]]).