From: Charles Plessy Date: Tue, 14 Aug 2018 00:27:55 +0000 (+0900) Subject: Methyl tranferases. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=328863980cdf3b1df735a675f84b3de73706af29;p=source%2F.git Methyl tranferases. --- diff --git a/biblio/18007650.mdwn b/biblio/18007650.mdwn new file mode 100644 index 00000000..b9b753b6 --- /dev/null +++ b/biblio/18007650.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Evolutionary developmental biology and genomics."]] +[[!tag Oikopleura epigenetics]] + +Nat Rev Genet. 2007 Dec;8(12):932-42 doi:10.1038/nrg2226 + +Cañestro C, Yokoi H, Postlethwait JH. + +Evolutionary developmental biology and genomics. + +[[!pmid 18007650 desc="O. dioica only has the Dnmt2 methyltransferase, and lacks Dnmt1 and Dnmt3."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index 312a25bb..ce67d9a2 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -56,9 +56,6 @@ Genome - Chromatin domains are rarely longer than 7 nucleosomes ([Navratilova et al., 2017|biblio/28115992]). - The entire machinery required for performing NHEJ repair of DSB (which is conserved from yeast to mammals) is undetectable ([[Denoeud et al., 2010|biblio/21097902]]). - - CYP1 family genes and their regulator AhR are not detectable ([[Yadetie et al, 2012|biblio/22300585]]). - - ~80 "house proteins" have been identified and more than half lack similarity - to known proteins ([[Hosp et al., 2012|biblio/22792236]]). - Only a partial mitochondrial genome was reconstituted in [[Denoeud et al., 2010|biblio/21097902]], due to cloning and sequencing difficulties that may have been caused by oligo-dT stretches. A/T-rich codons are more frequent than @@ -89,8 +86,21 @@ Genome “Spots of sequence ultraconservation are almost systematically located in non coding regions, including introns that are larger than average in such genes than in others.” ([[Denoeud et al., 2010|biblio/21097902]]). + + +Genes and pathways +------------------ + +(See also other sections) + + - ~80 "house proteins" have been identified and more than half lack similarity + to known proteins ([[Hosp et al., 2012|biblio/22792236]]). - _O. dioica_ has multiple CDK1 and Cyclin B paraplogs, some of which are implicated in oogenesis ([[Feng & Thompson, 2018|biblio/29969934]]). + - _O. dioica_ only has the Dnmt2 methyltransferase, and lacks Dnmt1 and Dnmt3. + - CYP1 family genes and their regulator AhR are not detectable + ([[Yadetie et al, 2012|biblio/22300585]]). + Transcriptome -------------