From: Charles Date: Mon, 13 Jul 2020 05:11:05 +0000 (+0900) Subject: Café X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=239f2c33a4e4924b4146bac4dbc52dadd19b8d50;p=source.git Café --- diff --git a/biblio/32619237.mdwn b/biblio/32619237.mdwn new file mode 100644 index 00000000..62de0252 --- /dev/null +++ b/biblio/32619237.mdwn @@ -0,0 +1,12 @@ +[[!meta title="Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic- +associated core promoter regulation."]] +[[!tag CAGE zebrafish cell_cycle promoter]] + +Nucleic Acids Res. 2020 Jul 3:gkaa563. doi:10.1093/nar/gkaa563 + +Wragg JW, Roos L, Vucenovic D, Cvetesic N, Lenhard B, Müller F. + +Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic- +associated core promoter regulation. + +[[!pmid 32619237 desc="“TATA-box enrichment in genes upregulated in G1 (∼30 bp upstream of the TSS), but no enrichment in WW dinucleotide frequency between the G1 and S/G2/M differentially expressed gene sets.” “Four TATA-divergent poly-W pentamers (TTAAA, TAAAT, TTTAA, AATAA) were significantly enriched (P < 0.001–0.01) in the promoters of genes upregulated in S/G2/M cells.” “TATA-box utilization is highly enriched in sharp promoters over other behaviours, interestingly however this is only true in the gene set upregulated in G1. In the S/G2/M upregulated gene set promoter shape was only weakly associated with TATA utilization.”"]]