From: Charles Plessy Date: Mon, 29 Jul 2013 06:38:49 +0000 (+0900) Subject: Ketchup X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=20fd2a067274a87ecca96ccae2b1ba7091d60aee;p=source.git Ketchup --- diff --git a/biblio/23064634.mdwn b/biblio/23064634.mdwn new file mode 100644 index 00000000..b0cae3e4 --- /dev/null +++ b/biblio/23064634.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Transcriptional burst frequency and burst size are equally modulated across the human genome."]] +[[!tag single_cell transcription]] + +Dar RD, Razooky BS, Singh A, Trimeloni TV, McCollum JM, Cox CD, Simpson ML, Weinberger LS. + +Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17454-9. doi: 10.1073/pnas.1213530109 + +Transcriptional burst frequency and burst size are equally modulated across the human genome. + +[[!pmid 23064634 desc="Large scale analysis of 8,000 loci by random insertion of lentiviral vectors."]] diff --git a/biblio/23815980.mdwn b/biblio/23815980.mdwn new file mode 100644 index 00000000..278fc762 --- /dev/null +++ b/biblio/23815980.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene."]] +[[!tag transcriptome splicing non-coding]] + +Gonzalez-Porta M, Frankish A, Rung J, Harrow J, Brazma A. + +Genome Biol. 2013 Jul 1;14(7):R70. + +Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene. + +[[!pmid 23815980 desc="The major transcript of 17 % of the protein-coding genes is non-coding. Often, this is explained by a retained intron near the 3′ UTR. The expression level of these non-coding major transcripts is lower than average."]] diff --git a/biblio/23867226.mdwn b/biblio/23867226.mdwn new file mode 100644 index 00000000..d1ec5988 --- /dev/null +++ b/biblio/23867226.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Competitive interactions eliminate unfit embryonic stem cells at the onset of differentiation."]] +[[!tag embryo cell-cell_interaction]] + +Sancho M, Di-Gregorio A, George N, Pozzi S, Sánchez JM, Pernaute B, Rodríguez TA. + +Dev Cell. 2013 Jul 15;26(1):19-30. doi: 10.1016/j.devcel.2013.06.012 + +Competitive interactions eliminate unfit embryonic stem cells at the onset of differentiation. + +[[!pmid 23867226 desc="Lower expression of c-Myc protein, but not RNA trigger elimination by neighbors."]] diff --git a/biblio/23870122.mdwn b/biblio/23870122.mdwn new file mode 100644 index 00000000..f7e3f3bc --- /dev/null +++ b/biblio/23870122.mdwn @@ -0,0 +1,10 @@ +[[!meta title="An epigenetic trap stabilizes singular olfactory receptor expression."]] +[[!tag 8-oxo-G olfaction demethylase H3K9me3]] + +Cell. 2013 Jul 18;154(2):325-36. doi: 10.1016/j.cell.2013.06.039 + +Lyons DB, Allen WE, Goh T, Tsai L, Barnea G, Lomvardas S. + +An epigenetic trap stabilizes singular olfactory receptor expression. + +[[!pmid 23870122 desc="8-oxoguanin as a readout of histone demethylation by LSD1."]] diff --git a/biblio/23873083.mdwn b/biblio/23873083.mdwn new file mode 100644 index 00000000..73ce167c --- /dev/null +++ b/biblio/23873083.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments."]] +[[!tag single_cell eQTL]] + +Wills QF, Livak KJ, Tipping AJ, Enver T, Goldson AJ, Sexton DW, Holmes C. + +Nat Biotechnol. 2013 Jul 21. doi: 10.1038/nbt.2642 + +Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments. + +[[!pmid 23873083 desc="Uses HapMap cell lines for easy eQTL analysis."]] diff --git a/biblio/23873938.mdwn b/biblio/23873938.mdwn new file mode 100644 index 00000000..be4bd9f9 --- /dev/null +++ b/biblio/23873938.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states."]] +[[!tag mC nucleolus]] + +Pontvianne F, Blevins T, Chandrasekhara C, Mozgová I, Hassel C, Pontes OM, Tucker S, Mokros P, Muchová V, Fajkus J, Pikaard CS. + +Genes Dev. 2013 Jul 15;27(14):1545-50. doi: 10.1101/gad.221648.113 + +Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states. + +[[!pmid 23873938 desc="A proportion of the rDNA repeats are silenced in cells that are do not have the highest transcriptional activity."]]