From: Charles Date: Mon, 2 Mar 2020 05:47:00 +0000 (+0900) Subject: Café X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=1a50675a8560044f7d5847c9819da357da273016;p=source.git Café --- diff --git a/biblio/30974905.mdwn b/biblio/30974905.mdwn new file mode 100644 index 00000000..176412f6 --- /dev/null +++ b/biblio/30974905.mdwn @@ -0,0 +1,10 @@ +[[!meta title="ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes."]] +[[!tag Oikopleura cellulose]] + +Inoue J, Nakashima K, Satoh N. + +Genes (Basel). 2019 Apr 10;10(4). pii: E294. doi:10.3390/genes10040294 + +ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes. + +[[!pmid 30974905 desc="A second GH6 gene (with no CesA domain) was found in Tunicates."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index 7f0bd9a3..6c68f951 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -175,6 +175,9 @@ Genes and pathways cellulose I was also found in _O. rufescens by_ [[Kimura and coll (2001)|biblio/11732199]]. The CesA gene is trans-spliced in the ascidian _Ciona intestinalis_ ([[Matthysse and coll., 2004|biblio/14722352]]). + - A GH6 (glycosyl hydrolase family 6) domain is found in the CesA genes, + as well as an independent genes, in Tunicates + ([[Inoue, Nakashima and Satoh, 2019|biblio/30974905]]). - _O. dioica_ has multiple CDK1 and Cyclin B paraplogs, some of which are implicated in oogenesis ([[Øvrebø and coll., 2015|biblio/25714331]], [[Feng & Thompson, 2018|biblio/29969934]]). @@ -234,6 +237,8 @@ Genes and pathways - Components of the constitutive centromere-associated network (CCAN) of the inner kinetochore cound not be found in the genome by ([[Feng and coll., 2019|biblio/31306061]]). + - _Nodal_ is not found in _O. dioica_'s genome ([[Onuma and coll., 2020|biblio/32029598]]). + Epigenome --------- @@ -249,6 +254,7 @@ Epigenome phase, while in endocycling cells, it increases directly after the end of the S phase ([[Spada, Chioda and Thompson (2006)|biblio/15937898]]). + Transcriptome ------------- @@ -283,6 +289,7 @@ Transcriptome - On the histone mRNAs, no purine-rich histone downstream element (HDE) was found by [[Chioda, Eskeland and Thompson in 2002|biblio/12446815]]. + Tools ----- @@ -339,7 +346,9 @@ Development the genome (doubling the genes would then double the amount of regulatory sequences). - Regular calcium waves are pulsing during embyogenesis. Their propagation and synchronicity is severly disrupted by the knockdown of the connexins CxA and CxB - ([[Mikhaleva, Tolstenkov and Glover 2019|biblio/30905687]]). + ([[Mikhaleva, Tolstenkov and Glover 2019|biblio/30905687]]). The calcium waves + are required for Bmp.a expression in descendants of the R (Right) blastomere + ([[Onuma and coll., 2020|biblio/32029598]]). - The tandem _propA_ and _propB_ genes control directly or indirectly _oik41a_ and proper development of the house-secreting epithelium ([[Mikhaleva et al., 2018|biblio/30217597]]).