From: Charles <charles.plessy@oist.jp>
Date: Wed, 10 Apr 2019 04:29:43 +0000 (+0900)
Subject: NanoSV
X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=179825dc236cd8cf5ae72da131cd7039c2200460;p=source%2F.git

NanoSV
---

diff --git a/biblio/29109544.mdwn b/biblio/29109544.mdwn
new file mode 100644
index 00000000..3b05e14c
--- /dev/null
+++ b/biblio/29109544.mdwn
@@ -0,0 +1,12 @@
+[[!meta title="Mapping and phasing of structural variation in patient genomes using nanopore sequencing."]]
+[[!tag LAST software variants]]
+
+Cretu Stancu M, van Roosmalen MJ, Renkens I, Nieboer MM, Middelkamp S, de Ligt
+J, Pregno G, Giachino D, Mandrile G, Espejo Valle-Inclan J, Korzelius J, de
+Bruijn E, Cuppen E, Talkowski ME, Marschall T, de Ridder J, Kloosterman WP.
+
+Nat Commun. 2017 Nov 6;8(1):1326. doi:10.1038/s41467-017-01343-4
+
+Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
+
+[[!pmid 29109544 desc="Primary paper for NanoSV.  Fed with last-split alignments."]]
diff --git a/tags/LAST.mdwn b/tags/LAST.mdwn
index 064373bd..b0cb4e60 100644
--- a/tags/LAST.mdwn
+++ b/tags/LAST.mdwn
@@ -7,7 +7,8 @@ _bibliography in progress..._
 
  - `last-split` ([[Frith and Kawaguchi, 2017|biblio/25994148]]): heuristic
    algorithm inspired by the “repeated matches algorithm” of Durbin and coll.
-   (1998).
+   (1998).  Its output is also used by third-party tool NanoSV ([[Cretu and
+   coll., 2017|biblio/29109544]].
 
  - `last-train` ([[Hamada, Ono, Asai and Frith, 2017|biblio/28039163]]):
    estimation of alignment parameters.