From: Charles Plessy Date: Fri, 20 Apr 2018 00:53:24 +0000 (+0900) Subject: XbaI X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=0a4268e0b3d17489d897759b47246d0d60b1afd1;p=source%2F.git XbaI --- diff --git a/biblio/29482522.mdwn b/biblio/29482522.mdwn new file mode 100644 index 00000000..1b0cdc83 --- /dev/null +++ b/biblio/29482522.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate."]] +[[!tag Oikopleura CAGE promoter motif]] + +Danks GB, Navratilova P, Lenhard B, Thompson EM + +BMC Genomics. 2018 Feb 26;19(1):164. doi:10.1186/s12864-018-4504-5 + +Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate. + +[[!pmid 29482522 desc="“369/502 (73.5%) of genes that are specifically expressed in the testis are associated with a TCTAGA promoter element, compared to 100/906 (11.0%) that are specific to the ovary and 7/275 (2.5%) that are specific to the trunk.” “Strong association of gene body DNA methylation with TATA-dependent promoters in O. dioica.” "]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index ed52be9b..930c9e77 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -32,6 +32,9 @@ Transcriptome times in the genome ([[Ganot et al., 2004|biblio/15314184]]). - A study using CAGE found that 39% of annotated gene models are trans-spliced with the SL and that 42% of SL transcripts are monocistronic ([[Danks et al., 2015|biblio/25525214]]). + - A `TCTAGA` promoter element is found in 73.5% of the non-trans-spliced genes detected with + CAGE in testis ([[Danks et al, 2018|biblio/29482522]]). + Development -----------