From: Charles Date: Tue, 7 May 2019 04:31:26 +0000 (+0900) Subject: Café X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=088f93be6a9602e64bbb4217347866b8ae0ad45e;p=source.git Café --- diff --git a/biblio/31028425.mdwn b/biblio/31028425.mdwn new file mode 100644 index 00000000..83983ba8 --- /dev/null +++ b/biblio/31028425.mdwn @@ -0,0 +1,10 @@ +[[!meta title="The evolutionary landscape of the Rab family in chordates."]] +[[!tag Oikopleura]] + +Coppola U, Ristoratore F, Albalat R, D'Aniello S. + +Cell Mol Life Sci. 2019 Apr 26. doi:10.1007/s00018-019-03103-7 + +The evolutionary landscape of the Rab family in chordates. + +[[!pmid 31028425 desc="“O. dioica lineage showed 11 additional losses, Rab4, Rab7L1, Rab9, Rab19/43, Rab21 Rab26/37, Rab28, Ift27, Rasef, EFcab4/Rab44 and RabX1. This species has, therefore, lost almost the 50% of the Rab toolkit, being the metazoan species with the smallest number of Rab subfamilies described so far.” “We detected [...] 5 independent duplications in O. dioica (Rab5/17, Rab6, Rab7, Rab10, Rab35).” O. dioica lost the Rab-EF chimeras Rasef and EFcab4/44, but kept Rab46."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index cfaa2fe7..f7b9186f 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -165,6 +165,8 @@ Genes and pathways muscular arouse after the separation of the appendicularian and ascidian lineages, and 3 are cytoplasmic, one of them being intronless and possibly originated by retrotransposition. + - Duplications in the Rab family: Rab5/17, Rab6, Rab7, Rab10, Rab35. The EF-Rab chimera + Rab46 is kept ([[Coppola and coll., 2019|biblio/31028425]]). See below for the losses. ### Lost @@ -184,7 +186,9 @@ Genes and pathways et al., 2008|biblio/19030770]], [[Denoeud et al., 2010|biblio/21097902]]). It is found in _Ciona_ but not in _C. elegans_ ()[[Martz et al., 2008|biblio/19030770]]. - + - More than 50 % of the Rab family is lost ([[Coppola and coll., 2019|biblio/31028425]]): + Rab4, Rab7L1, Rab9, Rab19/43, Rab21 Rab26/37, Rab28, Ift27, RabX1 and the + the EF-rab chimera Rasef and EFcab4/Rab44. Transcriptome