From: Charles Plessy Date: Thu, 14 Nov 2019 07:49:15 +0000 (+0900) Subject: One more phylogeny. X-Git-Url: https://source.charles.plessy.org/?a=commitdiff_plain;h=0363aa8fc06a26776cd630dc16a919de22e86c3f;p=setup%2F.git One more phylogeny. --- diff --git a/biblio/12116483.mdwn b/biblio/12116483.mdwn new file mode 100644 index 00000000..c1c7457f --- /dev/null +++ b/biblio/12116483.mdwn @@ -0,0 +1,10 @@ +[[!meta title="Urochordates are monophyletic within the deuterostomes."]] +[[!tag Oikopleura tunicate]] + +Syst Biol. 2000 Mar;49(1):52-64 doi:10.1080/10635150050207384 + +Swalla BJ, Cameron CB, Corley LS, Garey JR. + +Urochordates are monophyletic within the deuterostomes. + +[[!pmid 12116483 desc="Places appendicularians as sister to all other tunicates, but notes that long branches raise uncertaincies."]] diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn index c717b238..16286552 100644 --- a/tags/Oikopleura.mdwn +++ b/tags/Oikopleura.mdwn @@ -39,13 +39,15 @@ Parasites: _Oodinium pouchetii_ and others. Phylogeny --------- + - 18S rDNA phylogeny of [[Swalla and coll., 2000|biblio/12116483]] places + larvaceans sister to all tunicates. - Based on 18S rRNA sequences from 110 species including 4 Oikopleuridae, this clade is sister of Stolidobranchia (that is, not basal in Tunicates). Stolidobranchia. Nevertheless, it might be an artefact of AT-richness or long-branch attraction ([[Tsagkogeorga et al, 2009|biblio/19656395]]). - Studies based on 146 genes in 28 species ([[Delsuc et al., 2006|biblio/16495997]]) and then 258 orthologous proteins from 63 species ([[Delsuc et al., 2018|biblio/29653534]]) - show that Oikopleuridae is basal to all other tunicates. + show that Oikopleuridae is sister to all other tunicates. - “The difference between coding sequences was considerably higher in comparisons between strains of different oceans than within the Bergen gene pool. We ignore whether and how Oikopleura dioica is subdivided into multiple