- `last-split` ([[Frith and Kawaguchi, 2017|biblio/25994148]]): heuristic
algorithm inspired by the “repeated matches algorithm” of Durbin and coll.
- (1998). Its output is also used by third-party tool NanoSV ([[Cretu and
- coll., 2017|biblio/29109544]].
+ (1998). It searchs for an optimal set of local alignments (as opposed to a set
+ of optimal local alignments). Its output is also used by third-party tool
+ NanoSV ([[Cretu and coll., 2017|biblio/29109544]]).
- `last-train` ([[Hamada, Ono, Asai and Frith, 2017|biblio/28039163]]):
estimation of alignment parameters.