dotplot

diff --git a/biblio/29888139.mdwn b/biblio/29888139.mdwn
new file mode 100644 (file)
index 0000000..eb59746
--- /dev/null
+++ b/biblio/29888139.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="D-GENIES: dot plot large genomes in an interactive, efficient and simple way."]]
+[[!tag software assembly]]
+
+Cabanettes F, Klopp C.
+
+PeerJ. 2018 Jun 4;6:e4958. doi:10.7717/peerj.4958
+
+D-GENIES: dot plot large genomes in an interactive, efficient and simple way.
+
+[[!pmid 29888139 desc="Can export to SVG format as well."]]

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
index 268d29112c894b63262770b7f3e058984e51567d..b999bbb06924283cd3cc6ab647a874809ebc80a5 100644 (file)
--- a/tags/assembly.mdwn
+++ b/tags/assembly.mdwn
@@ -51,6 +51,10 @@ that most contact points are due to local (same-chromosome) proximity.  Version
 2 of SALSA uses unitigs and the assembly graph as input ([[Ghurye and coll.,
 2019|biblio/31433799]]).
 
+Assemblies can be aligned with [[last-dotplot|LAST]] or, for SVG export and
+interactive browsing with D-GENIES ([[Cabanettes and Klopp
+2018|biblio/29888139]]).
+
 BUSCO ([[Simão and coll., 2015|biblio/26059717]], [[Waterhouse and coll.,
 2017|biblio/29220515]]) assesses the presence of evolutionary conserved single-copy
 genes in the assemblies.  Seppey, Manni and Zdobnov EM ([[2019|biblio/31020564]])