[[!meta title="Extra-long first-strand cDNA synthesis."]]
-[[!tag thermo-enhancement library]]
+[[!tag thermo-enhancement library enzyme trehalose]]
+
+Biotechniques. 2002 May;32(5):984-5.
+
+Carninci P, Shiraki T, Mizuno Y, Muramatsu M, Hayashizaki Y.
+
+Extra-long first-strand cDNA synthesis.
+
[[!pmid 12019793 desc="First publication of our laboratory using a mixture of trehalose and sorbitol. T4gp32 does not seem to improve trehalose-enhanced protocols at standard concentrations."]]
12711698 [amplification] [tracked]
Uses T3N9 instead of T7dT during all the RT reactions. No 3' bias. Efficient on degraded RNA. Independant of polyadenylation (useful for non-polyA genes, like histones).
-12188181 [libraries]
-Nuclear integrity preserved during tissue grinding.
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12560512 [amplification] [tracked]
«Semi-linear» Taq polymerase amplification used on the cDNA sample at the labelling step.
14602935 [amplification] [tracked]
Performs SMART, then exponential PCR, then random-primed klenow labelling.
-11414214 [libraries]
-Alternative to homopolymeric priming: the use of GN5 3' overhanging oligls as a template for second strand cDNA synthesis.
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12398200 [amplification]
Advocates a systematic round of RNA amplificatin, becaus it reduces interarray variability.
9373199 [libraries]
Oligo-capping to build 5' ou FL cDNA libraries.
-11337467 [libraries]
-Oligo-capping to study transcription initiation genomewide.
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-11375929 [libraries]
-Oligo-capping to fine-map transcription start sites.
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14606961 [libraries]
The nuclease activity of T7 RNA pol could also show some transcript specificity.
14704353 [libraries] [tracked]
T4 DNA ligase used to ligate a double stranded cap-tag.
-11730011 [libraries]
-Type IIS restriction digest followed py 3'primer ligation, to rempve the poly A from cDNA.
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3799962 [enzymes]
Optimal : Donor/acceptor 5:1; hexammine cobalt chloride 5.0 mM, PEG8000 25%; ATP 100µM. Inhibitors: ATP > 100 µM, MN 2+ > 5mM, NaCl > 20 mM.
8125298 [libraries]
Oligo capping primary paper.
-11042159 [libraries]
-Biotin-labeled RNA to remove hybridizing cDNA.
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12902159 [networks]
Correlating subnetwork topology, correlation or inverse collrelation, and phase.