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+[[!meta title="de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer."]]
+[[!tag Nanopore yeast mitochondrion]]
+
+Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C,
+Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J,
+Aury JM.
+
+Gigascience. 2017 Feb 1;6(2):1-13. doi:10.1093/gigascience/giw018
+
+de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
+
+[[!pmid 28369459 desc="Assembled mitochondrial genomes with ABruijn."]]
contigs using long error-prone reads, untangles the graph by resolving repeats,
and then uses it to refine the contings and increase their accuracy.
+The predecessor of Flye, ABruijn, was reported by [[Istace and coll.
+(2017)|biblio/28369459]] to be able to assemble mitochondrial genomes (unlike
+Canu and other assemblers).
+
When coverage is too low for efficient reference-free assembly, related
references can be used as a guide. The Ragout software ([[Kolmogorov and
coll., 2014|biblio/24931998), [[Kolmogorov and coll., 2018|biblio/30341161]])