SALSA

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+[[!meta title="Scaffolding of long read assemblies using long range contact information."]]
+[[!tag genome assembly software]]
+
+Ghurye J, Pop M, Koren S, Bickhart D, Chin CS.
+
+BMC Genomics. 2017 Jul 12;18(1):527. doi:10.1186/s12864-017-3879-z
+
+Scaffolding of long read assemblies using long range contact information.
+
+[[!pmid 28701198 desc="Does not require a priori knowledge on the number of chromosomes.  Outperforms LACHESIS on noisy data."]]

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
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@@ -33,6 +33,10 @@ Relase notes of HM2 version 20180603 suggest to use “_HapCUT2 or other phasing
 tools to get the high-quality haplotype assembly based on the reference haploid
 assembly_”.
 
+SALSA (Simple AssembLy ScAffolder, [Ghurye and coll., 2017|biblio/28701198]])
+takes Hi-C data and contigs as input and scaffolds them under the hypothesis
+that most contact points are due to local (same-chromosome) proximity.
+
 BUSCO ([[Simão and coll., 2015|biblio/26059717]], [[Waterhouse and coll.,
 2017|biblio/29220515]]) assesses the presence of evolutionary conserved single-copy
 genes in the assemblies.