Café

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+[[!meta title="Accurate identification of centromere locations in yeast genomes using Hi-C."]]
+[[!tag assembly software]]
+
+Varoquaux N, Liachko I, Ay F, Burton JN, Shendure J, Dunham MJ, Vert JP, Noble WS.
+
+Nucleic Acids Res. 2015 Jun 23;43(11):5331-9. doi:10.1093/nar/gkv424.
+
+Accurate identification of centromere locations in yeast genomes using Hi-C.
+
+[[!pmid 25940625 desc="Tested on yeast and Plasmodium falciparium.  First, detects regions enriched in Hi-C contacts.  Then, prioritises local maxima enriched in trans-contacts."]]

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
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@@ -51,6 +51,9 @@ that most contact points are due to local (same-chromosome) proximity.  Version
 2 of SALSA uses unitigs and the assembly graph as input ([[Ghurye and coll.,
 2019|biblio/31433799]]).
 
+The Hi-C data can also be used to call the location of centromeres ([[Varoquaux
+and coll., 2015|biblio/25940625]], Marie-Nelly and coll., 2014(not read)).
+
 Assemblies can be aligned with [[last-dotplot|LAST]] or, for SVG export and
 interactive browsing with D-GENIES ([[Cabanettes and Klopp
 2018|biblio/29888139]]).